Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1756
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    31   0.98 
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    28   6.9  
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588...    28   6.9  
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579     28   9.1  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +1

Query: 16   LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 171
            L  KGSPRS +   P P E   +E+Q+     DG    L++ VVQ   PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 348 GRRYHCSEEAAGQQAHRDQLRSGRPSSP 431
           GR    + EAAG QA R Q    RP++P
Sbjct: 59  GRSSAAAAEAAGSQARRSQSTERRPATP 86


>01_06_1535 +
           38057802-38057999,38058338-38058437,38058730-38058890,
           38059166-38059363,38059442-38059534,38059732-38059854,
           38060637-38060884,38061004-38061175,38061407-38061493,
           38061523-38061786,38062415-38062577,38062839-38062926,
           38063010-38063079,38063566-38063694,38063773-38063811,
           38065539-38065760,38065935-38065999,38066095-38066288,
           38066539-38066805,38066908-38066995,38067091-38067216,
           38067291-38067400,38067523-38067671
          Length = 1117

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 76  KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 198
           K RE+ ++ RL+  V DF E Y  Q K        +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161


>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
          Length = 458

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 348 GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 437
           GRR     E  G+ A  D  R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,606
Number of Sequences: 37544
Number of extensions: 358693
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)