Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1756
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    30   2.0  
AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p...    29   4.7  
AF016676-2|AAG24106.1|  500|Caenorhabditis elegans Cytochrome p4...    29   4.7  
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    28   6.2  
AF016676-4|AAG24104.1|  463|Caenorhabditis elegans Cytochrome p4...    28   8.1  

>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 585 LNIPGY*YFKRWTKKFLGSNLIRFNMGAVGHVL 487
           L  PGY  F+RWTK+F G  +  F MG + +V+
Sbjct: 43  LEKPGYECFRRWTKQFGG--VYTFWMGNIPYVI 73


>AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p450
           family protein 33C2 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 576 PGY*YFKRWTKKFLGSNLIRFNMGAVGHVL 487
           PGY  F+RWTKK+   ++  F +G   H++
Sbjct: 46  PGYEAFERWTKKY--GDIYTFWIGNTPHIM 73


>AF016676-2|AAG24106.1|  500|Caenorhabditis elegans Cytochrome p450
           family protein 33C3 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 585 LNIPGY*YFKRWTKKFLGSNLIRFNMGAVGHVL 487
           +N PGY  F+ WTKK+   ++  F MG   +V+
Sbjct: 43  MNKPGYECFRNWTKKY--GDVYTFWMGKTPYVM 73


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 576 PGY*YFKRWTKKFLGSNLIRFNMGAVGHVL 487
           PGY  F+RWTKK+   ++  F +G   H++
Sbjct: 46  PGYKAFERWTKKY--GDVYTFWIGNTPHIM 73


>AF016676-4|AAG24104.1|  463|Caenorhabditis elegans Cytochrome p450
           family protein 33C6 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 585 LNIPGY*YFKRWTKKFLGSNLIRFNMGAVGHVL 487
           L  PGY  F+RWTK+F   ++  F MG   +++
Sbjct: 43  LEKPGYECFRRWTKQF--GDVYTFWMGNTPYII 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,827
Number of Sequences: 27780
Number of extensions: 278817
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)