Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1755
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   2.6  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    27   3.4  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   7.9  

>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 77  DVKLHVEIGQIGG-SLSDYVNENTWPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMT 253
           DV  HV I      SLSD    N +P ++F  +   +  + G NDI+     + N Y ++
Sbjct: 124 DVASHVNISSPSAPSLSD----NLFPGSSFSASSQQNPSSPGSNDIKSEFAAVKNEYVLS 179

Query: 254 IPGIFNGSLPPSSIHSFRRILSNVT 328
                  +  PSS  S   + S  T
Sbjct: 180 PTSPTTSAAFPSSFSSLPLVSSKPT 204


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 338 EMLEMLLVDHKETFTNVFYNSALDDSDKIAYAYKN 442
           E  E ++ +  E  TNVFY S  DD + +   Y+N
Sbjct: 91  EEFENVVKNGHEASTNVFYESDGDDEEFVNEEYEN 125


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 356 LVDHKETFTNVFYNSALDDSDKIAYAYKNISMINNV 463
           L+   + F +V+ N+  D+S++  Y   N+S I  V
Sbjct: 874 LLAFADAFNDVYDNAIFDESNQFKYGLINLSGIERV 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,320
Number of Sequences: 5004
Number of extensions: 66409
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)