Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1755
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135...    33   0.22 
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    31   0.88 
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710...    29   2.7  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   4.7  
09_04_0748 + 19901687-19902460                                         28   8.2  

>01_01_0154 -
           1355601-1356102,1356197-1356389,1356465-1356520,
           1356997-1357066,1357188-1357314,1357418-1357695,
           1357908-1358065,1358166-1358246,1358339-1358410,
           1358531-1358602,1358729-1358867,1358987-1360045,
           1360170-1360257
          Length = 964

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
 Frame = +2

Query: 47  WP-PNAPLAPTDVKLH---VEIGQIGGSLSDYVNENTWPL--NAFVPTLAPSTINDGDND 208
           WP PN P  P  V  H   +EI     S   Y+N N  PL   A+ PT   +    G   
Sbjct: 280 WPQPNDPTPPYTVIFHFSELEILTNNASRQFYINLNGEPLIDTAYEPTYLTARYLYGLEP 339

Query: 209 IQIFLKQLSNAYNMTIPGIFNGSLPP--SSIHSFRRILSNV--TESGEMLEMLLV-DHKE 373
           ++      ++ YN+TI    N +LPP  ++   F  I + V  T+S +   M+ + D  +
Sbjct: 340 LE-----RTSRYNITINATANSTLPPLINAAEIFSIISTAVIGTDSQDASSMMAIKDKYQ 394

Query: 374 TFTNVFYNSALDDS---DKIAYAYKNISMINNVTF-ISTAELIAD 496
              N   +  +  +   DK+  +Y N S    ++  +S++ L AD
Sbjct: 395 VKKNWMGDPCMPKTFAWDKLTCSYPNSSGARIISLNLSSSGLSAD 439


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 86  LHVEIGQIGGSLSDYVNENT--WPLNAFVPTLAPSTINDGDNDIQIFLKQLSNAYNMTIP 259
           LH  +     S+ ++V   T    L+  +P + P+T N+     +    QL N  N  I 
Sbjct: 309 LHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQVTYQLVNLVNQVIT 368

Query: 260 GIFNGSLPPSS 292
            + NG+ PP +
Sbjct: 369 NVSNGNFPPQT 379


>02_05_0671 -
           30769631-30769803,30770535-30770873,30770952-30771036,
           30771229-30771369,30771802-30771873,30772183-30772302,
           30772606-30772677,30772758-30772895,30773249-30773320,
           30773609-30773685,30773761-30773837,30773960-30774077,
           30774852-30774930
          Length = 520

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
 Frame = +2

Query: 2   YIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLSDYVNENTWPLNAFVPTLAP 181
           Y+GS++   ++ +G    N  ++   +   +EIG +G ++S       +PL  +      
Sbjct: 224 YLGSRKFLQELDQGADSVNG-ISSLLIDQVLEIGSVGKAISQ-----GYPL-FYAHAAGN 276

Query: 182 STINDGDNDIQIFLKQLSNAYNMTIP--GIFNGSLPPSSIHSFRRILSNVTESGEMLEML 355
           S+I+    D      +   + N+ +      N  +PPSS+ SF  +  N +  G +LE  
Sbjct: 277 SSISMKMVDALQSASESLGSDNVKVKPAASSNPGVPPSSLMSF--LGKNSSTPGLVLE-- 332

Query: 356 LVDHKETFTNVFYNSALD 409
             D    F+N FY+S LD
Sbjct: 333 --DFDSQFSNRFYHSTLD 348


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 212 QIFLKQLSNAYNMTIPGIFNGSLPPS 289
           ++ L+  S A N++ PG+  G+LPPS
Sbjct: 186 RLLLRYWSEALNLSPPGVRGGALPPS 211


>09_04_0748 + 19901687-19902460
          Length = 257

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 324 TLDNILLNECIDDGGREPLKI 262
           TLD +L +E  D GGR P+++
Sbjct: 106 TLDKLLRDEASDSGGRRPVRV 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,798
Number of Sequences: 37544
Number of extensions: 426566
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)