Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1755
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF240470-1|AAG11414.1|  695|Drosophila melanogaster nicastrin pr...    86   4e-17
BT003245-1|AAO25002.1|  709|Drosophila melanogaster LD36812p pro...    86   5e-17
AE014297-3647|AAS65213.1|  665|Drosophila melanogaster CG7012-PB...    86   5e-17
AE014297-3646|AAF56349.2|  695|Drosophila melanogaster CG7012-PA...    86   5e-17
AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    29   4.6  
AL121806-6|CAB58081.1|  373|Drosophila melanogaster EG:BACR42I17...    29   8.0  

>AF240470-1|AAG11414.1|  695|Drosophila melanogaster nicastrin
           protein.
          Length = 695

 Score = 86.2 bits (204), Expect = 4e-17
 Identities = 63/221 (28%), Positives = 102/221 (46%)
 Frame = +2

Query: 2   YIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLSDYVNENTWPLNAFVPTLAP 181
           YIGSQR  YD+++  +P  +   P     +++     G+L D  N     LN    TLA 
Sbjct: 330 YIGSQRFVYDMEKLQFPTESTGTPPIAFDNIDFMLDIGTLDDISNIKLHALNG--TTLAQ 387

Query: 182 STINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILSNVTESGEMLEMLLV 361
             +   +N    + K     +N+ I    +  LPP+S  SF R   N          L++
Sbjct: 388 QILERLNN----YAKSPRYGFNLNIQSEMSAHLPPTSAQSFLRRDPN-------FNALIL 436

Query: 362 DHKETFTNVFYNSALDDSDKIAYAYKNISMINNVTFISTAELIADGLMKETDTQVKISRL 541
           + + T  N +Y+S  DD+D + + Y N S      F    E+     +     Q+K+  +
Sbjct: 437 NARPT--NKYYHSTYDDADNVDFTYANTSK----DFTQLTEVNDFKSLNPDSLQMKVRNV 490

Query: 542 ATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFLKNETC 664
           ++ +A ALYQ + G+ YTG    +  + DE LYCFL++  C
Sbjct: 491 SSIVAMALYQTITGKEYTGTKVANPLMADEFLYCFLQSADC 531


>BT003245-1|AAO25002.1|  709|Drosophila melanogaster LD36812p
           protein.
          Length = 709

 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 63/221 (28%), Positives = 102/221 (46%)
 Frame = +2

Query: 2   YIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLSDYVNENTWPLNAFVPTLAP 181
           YIGSQR  YD+++  +P  +   P     +++     G+L D  N     LN    TLA 
Sbjct: 344 YIGSQRFVYDMEKLQFPTESTGTPPIAFDNIDFMLDIGTLDDISNIKLHALNG--TTLAQ 401

Query: 182 STINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILSNVTESGEMLEMLLV 361
             +   +N    + K     +N+ I    +  LPP+S  SF R   N          L++
Sbjct: 402 QILERLNN----YAKSPRYGFNLNIQSEMSAHLPPTSAQSFLRRDPN-------FNALIL 450

Query: 362 DHKETFTNVFYNSALDDSDKIAYAYKNISMINNVTFISTAELIADGLMKETDTQVKISRL 541
           + + T  N +Y+S  DD+D + + Y N S      F    E+     +     Q+K+  +
Sbjct: 451 NARPT--NKYYHSIYDDADNVDFTYANTSK----DFTQLTEVNDFKSLNPDSLQMKVRNV 504

Query: 542 ATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFLKNETC 664
           ++ +A ALYQ + G+ YTG    +  + DE LYCFL++  C
Sbjct: 505 SSIVAMALYQTITGKEYTGTKVANPLMADEFLYCFLQSADC 545


>AE014297-3647|AAS65213.1|  665|Drosophila melanogaster CG7012-PB,
           isoform B protein.
          Length = 665

 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 63/221 (28%), Positives = 102/221 (46%)
 Frame = +2

Query: 2   YIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLSDYVNENTWPLNAFVPTLAP 181
           YIGSQR  YD+++  +P  +   P     +++     G+L D  N     LN    TLA 
Sbjct: 300 YIGSQRFVYDMEKLQFPTESTGTPPIAFDNIDFMLDIGTLDDISNIKLHALNG--TTLAQ 357

Query: 182 STINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILSNVTESGEMLEMLLV 361
             +   +N    + K     +N+ I    +  LPP+S  SF R   N          L++
Sbjct: 358 QILERLNN----YAKSPRYGFNLNIQSEMSAHLPPTSAQSFLRRDPN-------FNALIL 406

Query: 362 DHKETFTNVFYNSALDDSDKIAYAYKNISMINNVTFISTAELIADGLMKETDTQVKISRL 541
           + + T  N +Y+S  DD+D + + Y N S      F    E+     +     Q+K+  +
Sbjct: 407 NARPT--NKYYHSIYDDADNVDFTYANTSK----DFTQLTEVNDFKSLNPDSLQMKVRNV 460

Query: 542 ATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFLKNETC 664
           ++ +A ALYQ + G+ YTG    +  + DE LYCFL++  C
Sbjct: 461 SSIVAMALYQTITGKEYTGTKVANPLMADEFLYCFLQSADC 501


>AE014297-3646|AAF56349.2|  695|Drosophila melanogaster CG7012-PA,
           isoform A protein.
          Length = 695

 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 63/221 (28%), Positives = 102/221 (46%)
 Frame = +2

Query: 2   YIGSQRVAYDIKRGVWPPNAPLAPTDVKLHVEIGQIGGSLSDYVNENTWPLNAFVPTLAP 181
           YIGSQR  YD+++  +P  +   P     +++     G+L D  N     LN    TLA 
Sbjct: 330 YIGSQRFVYDMEKLQFPTESTGTPPIAFDNIDFMLDIGTLDDISNIKLHALNG--TTLAQ 387

Query: 182 STINDGDNDIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILSNVTESGEMLEMLLV 361
             +   +N    + K     +N+ I    +  LPP+S  SF R   N          L++
Sbjct: 388 QILERLNN----YAKSPRYGFNLNIQSEMSAHLPPTSAQSFLRRDPN-------FNALIL 436

Query: 362 DHKETFTNVFYNSALDDSDKIAYAYKNISMINNVTFISTAELIADGLMKETDTQVKISRL 541
           + + T  N +Y+S  DD+D + + Y N S      F    E+     +     Q+K+  +
Sbjct: 437 NARPT--NKYYHSIYDDADNVDFTYANTSK----DFTQLTEVNDFKSLNPDSLQMKVRNV 490

Query: 542 ATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFLKNETC 664
           ++ +A ALYQ + G+ YTG    +  + DE LYCFL++  C
Sbjct: 491 SSIVAMALYQTITGKEYTGTKVANPLMADEFLYCFLQSADC 531


>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 419 CHCRPKQSCRKHS*RSLCDQLITF 348
           CHCRP  S RKH  R  C ++I+F
Sbjct: 819 CHCRPGYSRRKH--REPCRRVISF 840


>AL121806-6|CAB58081.1|  373|Drosophila melanogaster EG:BACR42I17.5
           protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 198 VIMIYKSS*NNCRMLT-T*QYPESLMALCHRHLYIHSE 308
           V+  YKS   N  +L    + P  +  LCHRH++IH +
Sbjct: 78  VVERYKSLAGNAAVLIKARRSPGKVQMLCHRHIHIHCQ 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,639,773
Number of Sequences: 53049
Number of extensions: 743324
Number of successful extensions: 1975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)