Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1755
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    30   1.4  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    28   7.4  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    28   7.4  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    27   9.8  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    27   9.8  

>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
 Frame = +2

Query: 110 GGSLSDYVNENTWPLNAFVPTLAPSTIND----GDNDIQIFLKQLSNAYNMTIPGIFNG- 274
           G ++ D+V   T  L A +  LA ++ N       N + I  K L+   N+T     +  
Sbjct: 309 GKAVGDWVAMLTG-LTALLAQLAQASSNQQLMSNANGVYILGKLLAIKKNVTTDETIDSW 367

Query: 275 SLPPSSIHSFRRILSNVTESGEMLEMLL-VDHKETFTNVF-YNSALDDSDKIAYAYKNI 445
            L   SI    R++     S ++L+ +L  +  E F +V  YNS L D D+IA  Y N+
Sbjct: 368 DLLQCSIFRVLRLMYTFERSRQLLKKVLPTEIFEKFVDVGNYNSVLTDYDQIAKMYDNL 426


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 262 SGYCHVVSIRQLFQEDLYIIITVIYC*WREGRYKSVQRPCIFVHII 125
           +G C ++S+  +F+   Y+I T     WR+  +  V+RP + +H I
Sbjct: 106 AGACMIISVVSIFENRFYVICTFS---WRD-HWTIVRRPWLLLHYI 147


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 206 DIQIFLKQLSNAYNMTIPGIFNGSLPPSSIHSFRRILS 319
           D +     L N +N T+ G FN S+PP    + +  LS
Sbjct: 456 DFESVKDSLQNNHNDTLEGSFNSSMPPPGRDATQSFLS 493


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 538 PRYLYLSVSFFHQTICYEFS 479
           P+Y+ LSV F H  +CY+ +
Sbjct: 2   PKYVALSVDFQHPNVCYQLT 21


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 487 EFSCGYKCNIVDHTDVFIGIS 425
           E  CG KC +VD+  VF  IS
Sbjct: 556 EKDCGGKCELVDYKSVFYNIS 576


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 167 VQKRSKAMYFRSHNLIRIHRSGRFQRVVLHRS 72
           V+KR  ++  +SH+ + +HR+ R     LH+S
Sbjct: 724 VRKRKGSISAQSHHSVPVHRASRVSLNTLHKS 755


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 167 VQKRSKAMYFRSHNLIRIHRSGRFQRVVLHRS 72
           V+KR  ++  +SH+ + +HR+ R     LH+S
Sbjct: 686 VRKRKGSISAQSHHSVPVHRASRVSLNTLHKS 717


>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 101 GQIGGSLSDYVNENTWPLNAFVPTLAPSTIND 196
           G +GGSL D  +  T  + +F P  AP   N+
Sbjct: 539 GNLGGSLDDSSSSGTGSVGSFAPHSAPPISNN 570


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 101 GQIGGSLSDYVNENTWPLNAFVPTLAPSTIND 196
           G +GGSL D  +  T  + +F P  AP   N+
Sbjct: 534 GNLGGSLDDSSSSGTGSVGSFAPHSAPPISNN 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,611
Number of Sequences: 27780
Number of extensions: 384870
Number of successful extensions: 927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)