Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1754
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    29   0.54 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   3.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   6.6  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   6.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   8.7  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 22/53 (41%), Positives = 29/53 (54%)
 Frame = -3

Query: 343  ANITMSWTGKSLITRLDIPSEPGALRGRRSLIKSLTSIGVTGCNASKGGKEAL 185
            ++I M+  GKS+I R+   S  G  R R  +IKSLT   VT CN  +   E L
Sbjct: 1000 SHIKMAEKGKSIILRV-YESLGGKSRARL-VIKSLTVASVTKCNGLEEDLEEL 1050


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 692 VERFCDVEXEGSRVDRFWSVKSHEN 618
           +E +CD + + S  D  W+V+ H N
Sbjct: 499 IEMYCDPDPDPSNTDTQWNVEEHIN 523


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   YSQIGYGSSYAPPRRPLGPTRG 67
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 150 VHVELVDSEVERRASLPPLDALQPVTPMEV 239
           +H++  + ++E+   +PP+  LQP +PM V
Sbjct: 56  IHLDEDNGDIEQ--DMPPVTRLQPTSPMAV 83


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 183 VLPHCLLILHEQGPRIECW 127
           ++P C + L+E+GPR+  W
Sbjct: 22  LIPKCTIDLYEKGPRLGGW 40


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 484 ANCMSVCSTNASETSSHQRAFSSMNNSDSVQITHAYNRCTASRSTFSWD 630
           AN ++  ++N +++SS+    S+MN++ SV     Y   + + S+ SW+
Sbjct: 119 ANSVTGYASNYTQSSSNST--STMNSTGSVSGGSVYPTNSTTNSSISWN 165


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 2   YSQIGYGSSYAPPRRPLGPTRG 67
           YSQ  Y     PP+ P  P+RG
Sbjct: 97  YSQPSYSQPSQPPKEPALPSRG 118


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +3

Query: 177 VERRASLPPLDALQPVTPMEVKDLIKDLRPRKAPG---SDGISNRVIKL 314
           VE+RA++ PL+ L+P   +  ++ + +  PR+ P    +D ++++ +K+
Sbjct: 374 VEKRAAMSPLNLLEP-RLINKQNTLANQSPRQPPNAFDADPLAHKKVKI 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,434
Number of Sequences: 5004
Number of extensions: 55267
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)