Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1754
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    34   0.14 
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    33   0.32 
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595     32   0.42 
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    31   0.74 
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    29   3.0  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   5.2  
07_03_0808 - 21668100-21669092                                         28   6.9  

>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 234 EVKDLIKDLRPRKAPGSDGISNRVI-KLLPV--QLIVMLASIFNAAMANCIFPAVWKEAD 404
           EV +LIK ++P KAP  DGI+   + K  P+  Q    LA+ F+A   + + P    ++ 
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NKSF 282

Query: 405 VIGIHKPGKPKNHPTSYRPISLL 473
           +  + K   P+     YRPISL+
Sbjct: 283 ITLVPKKSSPET-VNDYRPISLM 304


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMAN 371
           +P +  E+KD +  + P KAPG DG  + N   + K  P+ L  +L  I +  +AN
Sbjct: 151 KPYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206


>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
          Length = 514

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 162 LVDSEVERRASLPPLDALQPVTPMEVKDLIKDLRPRKAPGSDG 290
           ++  +++   S PP +AL P  P+++KD+   L+PR  P S G
Sbjct: 392 VIPVQIKDVQSQPPKEALSPAIPVQIKDV--QLQPRNEPVSIG 432


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +2

Query: 467 PPHVSRQTV*ASALQTPQRLRLIKGHSHR*TIRIPCKSLMRTTGAPPHGAHSRGT*PTKT 646
           P HV+   V A+A     ++  +  HS R  +R P  +       PPHG H  G  P + 
Sbjct: 37  PQHVAGAAVAAAAAAAGGQMYHVPQHSRREKLRFPPDA---GDSPPPHG-HGHGHAPQQQ 92

Query: 647 DLHGS 661
             HGS
Sbjct: 93  QQHGS 97


>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 54  GRLAAFDDDEKAELLADTLQTQCTPSTQSVD---PVHVELVDSEVERRASLPPLDALQPV 224
           G L  +DD   A+ +    ++QC    +  D   PVHV ++    + +A L P    Q V
Sbjct: 172 GPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQGV 231


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 9/142 (6%)
 Frame = +3

Query: 72   DDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPLDAL-----QPVTPME 236
            D++     +   L+T  T   Q V      L    V R       DA+     Q     E
Sbjct: 836  DENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEE 895

Query: 237  VKDLIKDLRPRKAPGSDGISNRVIK----LLPVQLIVMLASIFNAAMANCIFPAVWKEAD 404
            +   I  + P K+PG DG   R  +     L   +I+ + + F +     + P    +  
Sbjct: 896  IAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSG----LMPEGVNDTA 951

Query: 405  VIGIHKPGKPKNHPTSYRPISL 470
            ++ I K  +P +    YRPISL
Sbjct: 952  IVLIPKKDQPID-LKDYRPISL 972


>07_03_0808 - 21668100-21669092
          Length = 330

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 515 PQRLRLIKGHSHR*TIR-IPCKSLMRTTGAPPHGAHSRGT*P 637
           P+R R  +GH H+  +R +P  +  R T  PP  A  R + P
Sbjct: 139 PRRPRRARGHQHQPALRHLPPSTAPRRTPPPPGSASPRPSSP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,844,512
Number of Sequences: 37544
Number of extensions: 410386
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)