Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1754
(750 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 166 3e-41
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 130 1e-30
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 126 4e-29
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 124 1e-28
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 124 1e-28
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 124 1e-28
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 124 1e-28
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 124 1e-28
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 124 1e-28
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 124 2e-28
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 122 4e-28
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 122 7e-28
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 120 2e-27
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 114 1e-25
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 114 1e-25
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 114 1e-25
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 112 4e-25
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 112 4e-25
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 110 2e-24
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 109 5e-24
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 85 1e-16
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 75 8e-14
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 72 1e-12
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 57 3e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 49 6e-06
AY058335-1|AAL13564.1| 1893|Drosophila melanogaster GH10905p pro... 30 3.9
AL031227-3|CAA20227.1| 1891|Drosophila melanogaster EG:66A1.1,FB... 30 3.9
AE014298-646|AAX52476.1| 1894|Drosophila melanogaster CG12212-PB... 30 3.9
AE014298-645|AAF45960.2| 1894|Drosophila melanogaster CG12212-PA... 30 3.9
U86010-1|AAB95640.1| 1920|Drosophila melanogaster zinc-finger nu... 29 6.8
AE013599-629|AAF59106.1| 284|Drosophila melanogaster CG14755-PA... 29 8.9
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 166 bits (403), Expect = 3e-41
Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 1/231 (0%)
Frame = +3
Query: 36 PLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPLDA 212
P+ P G LA +++E+A A+ L+T+ T + + E +DS E + SLP
Sbjct: 379 PIRCPGGELAK-NEEEQANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLP---- 433
Query: 213 LQPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVW 392
++P+ E+ + IK L +K+PG D + N +K LPV+ I+ LA I+NA + FP W
Sbjct: 434 IKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQW 493
Query: 393 KEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFR 572
K A ++ IHKPGKP+ P SYRPISLL S D ++ + IL D QFGFR
Sbjct: 494 KMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFR 553
Query: 573 ANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
HS V+QVHRLT+HIL + + Y A+ D+ +AFD+VWH+ LI K+
Sbjct: 554 QGHSTVEQVHRLTKHILQAFDDKE--YCNAVFIDMQQAFDRVWHDGLISKV 602
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 130 bits (315), Expect = 1e-30
Identities = 68/171 (39%), Positives = 92/171 (53%)
Frame = +3
Query: 213 LQPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVW 392
+ P P EV ++I KAPG D I N +K LP Q I+ + +FNA + FP W
Sbjct: 433 ITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQW 492
Query: 393 KEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFR 572
K + IHKPGKP+ P SYRPISLL S + ++GI + QFGFR
Sbjct: 493 KLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFR 552
Query: 573 ANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
A H V+Q+HR+ E IL + + Y +L D+ +AFD+VWH L K+
Sbjct: 553 AGHCTVEQLHRVVEQILTAYDSKE--YCNSLFLDIREAFDRVWHIGLQLKI 601
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 126 bits (303), Expect = 4e-29
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWK 538
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 539 HAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRK 598
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 599 EHGSEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 646
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 124 bits (299), Expect = 1e-28
Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 1/239 (0%)
Frame = +3
Query: 21 VVAMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLP 200
+ + PL PSG D+E+A AD LQ P+ + + L+ A+L
Sbjct: 372 IAPIMPLRSPSGTWFR-SDEERASAFADHLQNVFRPNPSTNTFILPPLI------AANLD 424
Query: 201 PLDALQPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 377
P + + P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA
Sbjct: 425 PQEPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGY 483
Query: 378 FPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDE 557
FP WK++ ++ I KPGK K P+SYRPISLL + L
Sbjct: 484 FPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTH 543
Query: 558 QFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXM 734
QFGFR H ++QV+R+T I + Y A+ DVA+AFD+VW + L+FK+ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIKL 600
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 124 bits (299), Expect = 1e-28
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 363 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 422
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 423 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 482
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 483 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 530
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 124 bits (299), Expect = 1e-28
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 646
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 124 bits (299), Expect = 1e-28
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 646
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 124 bits (299), Expect = 1e-28
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 441 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 500
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 501 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 560
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 561 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 608
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 124 bits (299), Expect = 1e-28
Identities = 68/170 (40%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 599 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 646
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 124 bits (298), Expect = 2e-28
Identities = 67/170 (39%), Positives = 92/170 (54%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
QP+T E+ + IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 491 QPITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWK 550
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 551 HAQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 610
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
H QQ+ R+T+ IL R + Y A+ D+++AFD+VWH L+ KL
Sbjct: 611 EHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKL 658
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 122 bits (295), Expect = 4e-28
Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 1/239 (0%)
Frame = +3
Query: 21 VVAMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLP 200
+ + PL PSG D+E+A AD LQ P+ + + L+ A+L
Sbjct: 372 IAPIMPLRSPSGTWFR-SDEERACAFADHLQNVFRPNPSTNTFILPPLI------AANLD 424
Query: 201 PLDALQPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 377
P + + P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA
Sbjct: 425 PQEPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGY 483
Query: 378 FPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDE 557
FP WK++ ++ I KPGK K P+SYRPISLL + L
Sbjct: 484 FPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTH 543
Query: 558 QFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXM 734
QFGFR H ++QV+R+T I + Y A+ DVA+AFD+VW + L+FK+ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIKL 600
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 122 bits (293), Expect = 7e-28
Identities = 76/215 (35%), Positives = 106/215 (49%), Gaps = 1/215 (0%)
Frame = +3
Query: 81 EKAELLADTLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPLDALQPVTPMEVKDLIKD 257
EK E+ A+ L+ + TP + + + ++ + E + SLPP VT EVK+LI
Sbjct: 196 EKTEVFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPP----SAVTLEEVKNLIAK 251
Query: 258 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPK 437
L +KAPG D + NR I+LLP Q + L IFN+ + FP WK A +I IHK GK
Sbjct: 252 LPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTP 311
Query: 438 NHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEH 617
SYRPISLL S + QFGFR H +Q+HR+
Sbjct: 312 TDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNF 371
Query: 618 ILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFK 722
L + + Y D+ +AFD+VWH L++K
Sbjct: 372 ALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYK 404
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 120 bits (289), Expect = 2e-27
Identities = 76/215 (35%), Positives = 106/215 (49%), Gaps = 1/215 (0%)
Frame = +3
Query: 81 EKAELLADTLQTQCTPSTQSVDPVHVELVDS-EVERRASLPPLDALQPVTPMEVKDLIKD 257
EK E+ A+ L+ + TP + + + ++ + E + SLP L VT EVK+LI
Sbjct: 394 EKTEVFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLP----LSAVTLEEVKNLIAK 449
Query: 258 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPK 437
L +KAPG D + NR I+LLP Q + LA IFN+ + FP WK A +I IHK GK
Sbjct: 450 LPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTP 509
Query: 438 NHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEH 617
SYRP SLL S + QFGFR H +Q+HR+
Sbjct: 510 TDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNF 569
Query: 618 ILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFK 722
L + + Y D+ +AFD+VWH L++K
Sbjct: 570 ALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYK 602
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 114 bits (275), Expect = 1e-25
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
Frame = +3
Query: 78 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPLDA-----LQPVTPMEVK 242
DEKAE A L+++ + Q D E V +E+ + SL +PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 243 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 422
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 423 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVH 602
PGK SYRPISLL D S + QFGFR +H Q+
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLA 610
Query: 603 RLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
R+T+ IL + K + A D+ +AFD+VWH+ L++KL
Sbjct: 611 RVTQFILKAFDE-KDV-CSATFLDITEAFDRVWHDGLLYKL 649
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 114 bits (275), Expect = 1e-25
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
Frame = +3
Query: 78 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPLDA-----LQPVTPMEVK 242
DEKAE A L+++ + Q D E V +E+ + SL +PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 243 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 422
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 423 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVH 602
PGK SYRPISLL D S + QFGFR +H Q+
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLA 610
Query: 603 RLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
R+T+ IL + K + A D+ +AFD+VWH+ L++KL
Sbjct: 611 RVTQFILKAFDE-KDV-CSATFLDITEAFDRVWHDGLLYKL 649
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 114 bits (275), Expect = 1e-25
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
Frame = +3
Query: 78 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPLDA-----LQPVTPMEVK 242
DEKAE A L+++ + Q D E V +E+ + SL +PVT E+
Sbjct: 432 DEKAEAFASHLESRFR-TNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELN 490
Query: 243 DLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 422
LI L +KAPG+D ++N+ I LP + + L I+N + FP WK A + I K
Sbjct: 491 GLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPK 550
Query: 423 PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVH 602
PGK SYRPISLL D S + QFGFR +H Q+
Sbjct: 551 PGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLA 610
Query: 603 RLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
R+T+ IL + K + A D+ +AFD+VWH+ L++KL
Sbjct: 611 RVTQFILKAFDE-KDV-CSATFLDITEAFDRVWHDGLLYKL 649
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 112 bits (270), Expect = 4e-25
Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 1/222 (0%)
Frame = +3
Query: 81 EKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPP-LDALQPVTPMEVKDLIKD 257
EKA +LAD Q + + + ++ V ++ A P + + VT EV ++K
Sbjct: 413 EKANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKA 472
Query: 258 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPK 437
L RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP
Sbjct: 473 LHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPP 532
Query: 438 NHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEH 617
++P SYRPISLL F+ L Q+GFR + + +L +
Sbjct: 533 DNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNY 592
Query: 618 ILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXMGVP 743
I + + + G + D+ AFD VWH+ L+ KL +G P
Sbjct: 593 IKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIGTP 632
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 112 bits (270), Expect = 4e-25
Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 1/222 (0%)
Frame = +3
Query: 81 EKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPP-LDALQPVTPMEVKDLIKD 257
EKA +LAD Q + + + ++ V ++ A P + + VT EV ++K
Sbjct: 361 EKANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKA 420
Query: 258 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPK 437
L RK+PG DGI N +K LP I + +I N + FP WK A ++ I KPGKP
Sbjct: 421 LHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPP 480
Query: 438 NHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEH 617
++P SYRPISLL F+ L Q+GFR + + +L +
Sbjct: 481 DNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNY 540
Query: 618 ILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXMGVP 743
I + + + G + D+ AFD VWH+ L+ KL +G P
Sbjct: 541 IKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIGTP 580
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 110 bits (264), Expect = 2e-24
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 1/250 (0%)
Frame = +3
Query: 3 TLKSXTVVAMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVE 182
TL+ T +P + SG A D+D +A A LQ TP+ + L V
Sbjct: 369 TLRPPTETVLP-IKNSSGGWARSDED-RANTFAAHLQNVFTPNQATST---FALPSYPVN 423
Query: 183 RRASLPPLDALQPVTPMEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNA 359
R P+ P E+ +IKD L P+K+PG D I+ +I LP + + +FNA
Sbjct: 424 RHQQHTPI----VFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNA 479
Query: 360 AMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSK 539
FP WK +I I KPGK +SYRPISLL +
Sbjct: 480 ITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYH 539
Query: 540 GILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIF 719
I+ QFGFR +H ++QV+R+T I + Y A+ DV++AFDKVW + L+F
Sbjct: 540 NIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYRE--YCTAVFLDVSQAFDKVWLDGLMF 597
Query: 720 KLFXMGVPDS 749
K+ + +P+S
Sbjct: 598 KI-KISLPES 606
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 109 bits (261), Expect = 5e-24
Identities = 62/170 (36%), Positives = 87/170 (51%)
Frame = +3
Query: 216 QPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 395
+PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 35 KPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWK 94
Query: 396 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRA 575
A + I KPGK SYRPISLL D S + QFGFR
Sbjct: 95 HASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRK 154
Query: 576 NHSCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
+H Q+ R+T+ IL + K + A D+ +AFD+VWH+ L++KL
Sbjct: 155 DHGAEHQLARVTQFILKAFDE-KDV-CSATFLDITEAFDRVWHDGLLYKL 202
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 84.6 bits (200), Expect = 1e-16
Identities = 49/140 (35%), Positives = 70/140 (50%)
Frame = +3
Query: 315 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXX 494
LP+ ++ + +FNA FP WK++ +I I KP K K P SYRPISLL
Sbjct: 5 LPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQP-SYRPISLLTCLSKLF 63
Query: 495 XXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALXFD 674
+ + L QF F A H ++QV+R+T I + Y AL D
Sbjct: 64 EKGLLLRISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHRE--YCTALFLD 121
Query: 675 VAKAFDKVWHNXLIFKLFXM 734
VA+AFD+VW + L+FK+ +
Sbjct: 122 VAQAFDRVWLDGLMFKIIQL 141
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 75.4 bits (177), Expect = 8e-14
Identities = 47/172 (27%), Positives = 80/172 (46%)
Frame = +3
Query: 225 TPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 404
T +E+++ + + K+PG+D +S ++K L L L IFN + +P W+ A
Sbjct: 438 TLLEIENSVAKAKG-KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 405 VIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHS 584
+I I KP KP + SYRPISLL F+ ++ Q F++NHS
Sbjct: 497 IIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHS 556
Query: 585 CVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXMGV 740
+ + R+ L+ + L D +AFD+V + ++ +L G+
Sbjct: 557 TMDALLRIQHFASNALSTKN--HVSILATDFERAFDRVGIHAVLCRLERWGI 606
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 5/188 (2%)
Frame = +3
Query: 198 PPLDALQPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 377
PP +T EV + K +RP KAPG DGI ++K + F + + +
Sbjct: 394 PPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 378 FPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDE 557
FP WK+ ++ + K P N P SYRP+ LL S L +
Sbjct: 454 FPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQ 513
Query: 558 QFGFRANHSCVQQVHRLTEHILVGLNRPKPI-----YTGALXFDVAKAFDKVWHNXLIFK 722
Q+GFR S + + +T+ L+ + + Y + DV AF+ ++
Sbjct: 514 QYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGA 573
Query: 723 LFXMGVPD 746
+ +GVPD
Sbjct: 574 MRNLGVPD 581
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 56.8 bits (131), Expect = 3e-08
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = +3
Query: 234 EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIG 413
EV + L+ R++PG DGI+ + K + + LAS+F+ + FPA WK V+
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 414 IHK-PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCV 590
+ K P K K P+SYR I LL + V +G QFGFR CV
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVRE-VLPEG--CRWQFGFRQGR-CV 553
Query: 591 QQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKLFXMG 737
+ R H+ + Y D AFD V + + +L +G
Sbjct: 554 EDAWR---HVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 49.2 bits (112), Expect = 6e-06
Identities = 42/168 (25%), Positives = 75/168 (44%)
Frame = +3
Query: 222 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 401
+T +E+ ++ L+ APG + IS ++IK + +FN N P +K +
Sbjct: 433 ITYLELSSALQTLKGC-APGLNRISYQMIKNSSHTTKNRITKLFNEIF-NSHIPQAYKTS 490
Query: 402 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANH 581
+I I KP K +SYRPISL V+ ++ D+QFGF+
Sbjct: 491 LIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGK 550
Query: 582 SCVQQVHRLTEHILVGLNRPKPIYTGALXFDVAKAFDKVWHNXLIFKL 725
S ++++ ++T + D ++AFD+V + +I +L
Sbjct: 551 S-TSDCLLYVDYLIT----KSKMHTSLVTLDFSRAFDRVGVHSIIQQL 593
>AY058335-1|AAL13564.1| 1893|Drosophila melanogaster GH10905p
protein.
Length = 1893
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 421 NPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHQRAFSSMNNSDS 570
NP Q+++ + A S + CST+ S SH R+ SS+NN+++
Sbjct: 374 NPAQQQLMGNTLSARAESY---ESDASCSTDVSSGHSHSRSSSSLNNNNN 420
>AL031227-3|CAA20227.1| 1891|Drosophila melanogaster
EG:66A1.1,FBgn0003053;peb protein.
Length = 1891
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 421 NPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHQRAFSSMNNSDS 570
NP Q+++ + A S + CST+ S SH R+ SS+NN+++
Sbjct: 374 NPAQQQLMGNTLSARAESY---ESDASCSTDVSSGHSHSRSSSSLNNNNN 420
>AE014298-646|AAX52476.1| 1894|Drosophila melanogaster CG12212-PB,
isoform B protein.
Length = 1894
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 421 NPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHQRAFSSMNNSDS 570
NP Q+++ + A S + CST+ S SH R+ SS+NN+++
Sbjct: 374 NPAQQQLMGNTLSARAESY---ESDASCSTDVSSGHSHSRSSSSLNNNNN 420
>AE014298-645|AAF45960.2| 1894|Drosophila melanogaster CG12212-PA,
isoform A protein.
Length = 1894
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 421 NPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHQRAFSSMNNSDS 570
NP Q+++ + A S + CST+ S SH R+ SS+NN+++
Sbjct: 374 NPAQQQLMGNTLSARAESY---ESDASCSTDVSSGHSHSRSSSSLNNNNN 420
>U86010-1|AAB95640.1| 1920|Drosophila melanogaster zinc-finger
nuclear protein hindsightprotein.
Length = 1920
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 421 NPVNQKIIRRATARLASSCL*ANCMSVCSTNASETSSHQRAFSSMNNSDS 570
NP Q+++ + A S + CST+ S SH R+ SS+NN+++
Sbjct: 374 NPAQQQLMGNTLSAGAESY---ESDASCSTDVSSGHSHSRSSSSLNNNNN 420
>AE013599-629|AAF59106.1| 284|Drosophila melanogaster CG14755-PA
protein.
Length = 284
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 490 CMSVCSTNASETSSHQRAFSSMNNSDSVQITHAYNRCTASRSTFSWDLTDQNRSTREP 663
C STN S +SS + S ++S S T CT + S T+ N+S P
Sbjct: 121 CNKSSSTNNSSSSSSSSSSCSSSSSSSSSATSTLTSCTTAAVVPSNCSTNANKSPVSP 178
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,631,562
Number of Sequences: 53049
Number of extensions: 681626
Number of successful extensions: 2024
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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