Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1754
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    79   3e-15
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    60   2e-09
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    60   2e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    35   0.071
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    31   1.2  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
 Frame = +3

Query: 177 VERRASLPPLDALQP-VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIF 353
           V R   +  +  LQ  +T +E+ ++   + P  A G DGI+   I+ LP+     LA ++
Sbjct: 312 VRRNKRISKIAPLQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLY 371

Query: 354 NAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVS 533
           N +++  I P  WK+A+VI I KP K     +SYRPISLL                + + 
Sbjct: 372 NVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIE 431

Query: 534 SKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGAL-XFDVAKAFDKV 698
           S       Q GF+  HS    V ++T  I+ GLN   P     +   D+  AFDKV
Sbjct: 432 SPA----HQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKV 483


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 2/195 (1%)
 Frame = +3

Query: 135  QSVDPVHVELVDSEVE--RRASLPPLDALQPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 308
            Q ++  + EL  S V   + +S+P      P  P E++ +++     KA G D IS   +
Sbjct: 516  QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575

Query: 309  KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 488
            K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL     
Sbjct: 576  KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634

Query: 489  XXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALX 668
                         +     +  EQ GFR + S +  +H L   + VG  R   I    + 
Sbjct: 635  VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVF 690

Query: 669  FDVAKAFDKVWHNXL 713
             D  KAFD V H  +
Sbjct: 691  IDFKKAFDSVEHQAI 705


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 2/195 (1%)
 Frame = +3

Query: 135 QSVDPVHVELVDSEVE--RRASLPPLDALQPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 308
           Q ++  + EL  S V   + +S+P      P  P E++ +++     KA G D IS   +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314

Query: 309 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 488
           K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL     
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373

Query: 489 XXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALX 668
                        +     +  EQ GFR + S +  +H L   + VG  R   I    + 
Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVF 429

Query: 669 FDVAKAFDKVWHNXL 713
            D  KAFD V H  +
Sbjct: 430 IDFKKAFDSVEHQAI 444


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 2/195 (1%)
 Frame = +3

Query: 135 QSVDPVHVELVDSEVE--RRASLPPLDALQPVTPMEVKDLIKDLRPRKAPGSDGISNRVI 308
           Q ++  + E   S V   + +S+P      P  P +++  ++     KA G D IS   +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404

Query: 309 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXX 488
           K     +I ++   FN  + +   P  WK +    I K G  +N   +YRPI LL     
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463

Query: 489 XXXXXXXXXXXDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALX 668
                        +     +  EQ GFR + S +  +H L   + VG  R   I    + 
Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVF 519

Query: 669 FDVAKAFDKVWHNXL 713
            D  KAFD V H  +
Sbjct: 520 IDFKKAFDTVEHQAI 534


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 39  LVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPL 206
           +V P+GRLAAFD      + A++       S Q  +     +H E V S        P L
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261

Query: 207 DALQPVTPMEVK 242
            A  P++  EV+
Sbjct: 262 TAPNPISQYEVQ 273


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 198 PPLDALQPVTPM---EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMA 368
           PP+ A +P+ P    E++  I      KA GSD I+   +K     +I ++   FN  + 
Sbjct: 386 PPIMA-EPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLE 444

Query: 369 NCIFPAVWKEADVIGIHKPG 428
           +   P  WK +    I K G
Sbjct: 445 SGNIPKDWKTSKTTLIFKKG 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,430
Number of Sequences: 27780
Number of extensions: 330257
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)