Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1752
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   2.5  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   4.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.7  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 293 DIFGKEINIMLFNLLSISVSISFGACLS 210
           D+  +E  ++ FNL S+S S+    CL+
Sbjct: 314 DLISEEFRVLRFNLNSVSRSLQLSPCLT 341


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 293 DIFGKEINIMLFNLLSISVSISFG 222
           DI+GK+I    F L S +++ SFG
Sbjct: 272 DIYGKDIGYERFGLKSTTIASSFG 295


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 91  NNNDKPLKKIVIKIPSPTKFVVKEKEKGR 5
           N   +PL + + K   P+KF  K KEK +
Sbjct: 18  NERTEPLPRRIFKNDKPSKFKSKRKEKDK 46


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 269  IMLFNLLSISVSISFGACLSKQID 198
            +MLFNLL  S+ +    C  + +D
Sbjct: 1127 VMLFNLLFTSLPVIIAGCFDQDVD 1150


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -1

Query: 605  TDYI*NNHHGFPSLNDF*-KFLSRYYCFNYMYMSNILKVQS--PKLASNLDLSIREQS*T 435
            T+Y+  N     SLN+   KFL  Y CF Y+  +N + + +    L +    S++ +   
Sbjct: 794  TEYLKINTLSMKSLNNSSRKFLELYQCFFYVLQTNEMYLANYFQALKTEGTSSVKIRHAV 853

Query: 434  LFTLRIFEKME*TEEDGLLL 375
               L+IF       E+ LLL
Sbjct: 854  YLVLQIFGHGSNRREEVLLL 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,874
Number of Sequences: 5004
Number of extensions: 55233
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)