Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1752
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    35   0.069
02_01_0412 - 3005600-3007759                                           34   0.12 
02_01_0422 - 3084940-3087072                                           31   0.64 
11_06_0132 - 20431122-20431477,20431739-20433758                       31   1.1  
08_02_0293 - 15424397-15428041                                         31   1.1  
11_06_0128 - 20389375-20389781,20389988-20392787                       30   1.5  
11_06_0092 + 19973364-19975983,19976272-19976648                       28   6.0  

>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 274 ISLPKISR*NNSCNRCLFG*DIFKFSFI*YLSICNNNPSSSVYSIFSNMRNVNNVHDCSR 453
           ISL  +S  NN     + G  I K   + ++ +  N  S  +      ++ +  +H CS 
Sbjct: 251 ISLEYLSFANNGLQGTINGALIIKLRNLVFVDLGWNRFSGKIPDSIGQLKKLEELHMCSN 310

Query: 454 MLKSRLEANLGDCT 495
            L   L ++LG+CT
Sbjct: 311 NLSGELPSSLGECT 324



 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/74 (24%), Positives = 31/74 (41%)
 Frame = +1

Query: 274  ISLPKISR*NNSCNRCLFG*DIFKFSFI*YLSICNNNPSSSVYSIFSNMRNVNNVHDCSR 453
            ISL  +S  NN     + G  + K   +  L +  N  +  +    + ++ +  +H CS 
Sbjct: 986  ISLEYLSFPNNGLQGRIDGTHLIKLKNLATLDLRWNQLTGKIPDSINQLKQLEELHLCSN 1045

Query: 454  MLKSRLEANLGDCT 495
            M+   L   L  CT
Sbjct: 1046 MMSGELPGKLSSCT 1059


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +1

Query: 277 SLPKISR*NNSCNRCLFG*DIFKFSFI*YLSICNNNPSSSVYSIFSNMRNVNNVHDCSRM 456
           SL  +S  NN     + G  I K S + ++ +  N  S  + +    ++ +  +H  S  
Sbjct: 253 SLEYLSFANNGLQGTINGALIIKLSNLVFVDLGWNRSSGKIPNSIGQLKRLEELHMSSNN 312

Query: 457 LKSRLEANLGDCTF 498
           L   L ++LG+CT+
Sbjct: 313 LSGELPSSLGECTY 326


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 277 SLPKISR*NNSCNRCLFG*DIFKFSFI*YLSICNNNPSSSVYSIFSNMRNVNNVHDCSRM 456
           SL  +S  NN     +    I K   + ++ +  N  S  + +    ++ +  +H CS  
Sbjct: 241 SLEYLSFANNGLQGTIDDALIVKLINLVFVDLGWNRFSGKIPNSIGQLKRLKELHICSNN 300

Query: 457 LKSRLEANLGDCT 495
           L   L ++LGDCT
Sbjct: 301 LSGELPSSLGDCT 313


>11_06_0132 - 20431122-20431477,20431739-20433758
          Length = 791

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 364 LSICNNNPSSSVYSIFSNMRNVNNVHDCSRMLKSRLEANLGDC 492
           L++ NNN   S+     N++N+ N+   S  L   +   LG+C
Sbjct: 280 LNLSNNNLEGSIPQQIGNLKNLVNLDARSNKLSGEIPTTLGEC 322


>08_02_0293 - 15424397-15428041
          Length = 1214

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 361 YLSICNNNPSSSVYSIFSNMRNVNNVHDCSRMLKSRLEANLGDCT 495
           +LS+  NN + S+ S F N++N+  +      L  ++ A LG C+
Sbjct: 554 WLSLAGNNLTGSIPSGFGNLQNLAILQLNKNSLSGKVPAELGSCS 598


>11_06_0128 - 20389375-20389781,20389988-20392787
          Length = 1068

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 241 EMDNKLNNIMLISLPKISR*N--NSCNRCLFG*DIFKFSFI*YLSICNNNPSSSVYSIFS 414
           E+ + + N+  +S   ++R N   +  R LF  +I   S I  L I +NN   S+     
Sbjct: 497 EIPSTVANLTKLSALNLARNNFTGAIPRRLF--NILSLSKI--LDISHNNLEGSIPQEIG 552

Query: 415 NMRNVNNVHDCSRMLKSRLEANLGDC 492
           N+ N+   H  S +L   +  +LG+C
Sbjct: 553 NLINLEEFHAQSNILSGEIPPSLGEC 578


>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 361 YLSICNNNPSSSVYSIFSNMRNVNNVHDCSRMLKSRLEANLGDCT 495
           YLS+ NN+ + S+ S FS ++N+  +   +  L   L   +G+ T
Sbjct: 378 YLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPFTIGNLT 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,959
Number of Sequences: 37544
Number of extensions: 283664
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)