Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1752
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065646-1|BAC05872.1|  322|Homo sapiens seven transmembrane hel...    32   1.6  
AB065559-1|BAC05797.1|  304|Homo sapiens seven transmembrane hel...    30   8.8  

>AB065646-1|BAC05872.1|  322|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 322

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -1

Query: 356 INENLKISYPKRQRLQLLFYLDIF--GKEINIMLFNLLSISVSISFGACLSK 207
           +++ L++  P    LQ L +L+++     + ++L NLLS   +ISF AC+++
Sbjct: 49  VSQGLRLHSPMYMFLQHLSFLEVWYTSTTVPLLLANLLSWGQAISFSACMAQ 100


>AB065559-1|BAC05797.1|  304|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = -1

Query: 356 INENLKISYPKRQRLQLLFYLDIFGKEINIMLFNLLSISVSISFGACL 213
           ++E + +   K Q LQ+LF+L      + I+L NLL I V+++F + L
Sbjct: 9   VSEFILLGLSKSQNLQILFFLGFSVVFVGIVLGNLL-ILVTVTFDSLL 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,220,165
Number of Sequences: 237096
Number of extensions: 1694777
Number of successful extensions: 2183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)