Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1752
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   5.4  
U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 223 PKLIETEMDNKLNNIMLISLPKISR*NNSCNRCLF 327
           P +   EM+++++N+M  S+P +   +  C+ CLF
Sbjct: 689 PNISYREMNHRISNVMRRSIPIVLTNSLICSTCLF 723


>U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical
           protein ZK622.1 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 281 YQRYQDKIIAVIV-ASSDKISSNFHLFNICPYVIIIHL---PQFIPFFQICVT*IMFMTA 448
           Y + + +++AV V   ++KIS+   + ++C    I+     P  + FF +CV     M  
Sbjct: 158 YCKGEKRMVAVKVNKGNEKISTRAMIEDVCKEARIMRQYQHPNVVCFFGVCVEKEPIMLV 217

Query: 449 HECSSQG 469
            E +SQG
Sbjct: 218 MELASQG 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,161,157
Number of Sequences: 27780
Number of extensions: 297888
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)