Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1752
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.51 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 454 FVSSHEHYSRYAYLKKWNKLRKMDYYYIWTNIK 356
           FV +H  +    + K   +++  D YY+W + +
Sbjct: 120 FVPNHSSHEHPWFKKSVQRIKPYDEYYVWRDAR 152


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 346 FSFI*YLSICNNNPSSSVYSIFS 414
           FS + +L  CN+  +  +Y++FS
Sbjct: 44  FSVLFWLGYCNSAINPCIYALFS 66


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 346 FSFI*YLSICNNNPSSSVYSIFS 414
           FS + +L  CN+  +  +Y++FS
Sbjct: 492 FSVLFWLGYCNSAINPCIYALFS 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,794
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)