Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1749
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.45 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   5.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   5.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   7.3  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   7.3  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 295 GHVGRYRAVDHRLGSFNADDAVEVP*RIIEERNGNRCRTGRHP 167
           G V   R + H+  +F   D+VE    ++EE NG R   G  P
Sbjct: 611 GTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRIFFGSDP 653


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 151  GIYVEHVGFASEYRLLTHCFFSCGHL 74
            GI + H G    YR +    F CG L
Sbjct: 1224 GIGIHHSGLNRRYRQIVEVLFRCGQL 1249


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 136 HVGFASEYRLLTHCFFSCGHLKHKINENILLHISLIFHLR 17
           H G AS Y   T  F    +L+H +  +   H+S +F L+
Sbjct: 467 HTGMASSYEDYTATFIYGLYLRHGLACSPKTHVSFLFLLK 506


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 292 HVGRYRAVDHRLGSFNADDAVEV 224
           ++ RY+ +DH L   N +DA+++
Sbjct: 915 YLSRYKNLDHSLTGSNTEDAMDI 937


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 221 RNLYRIISVEGTKAVINSTITANMTFTKTSQKFGQWSDVRANTVY--GLGF 367
           R +Y++I+    +  ++S  T + +F  +S   G WS +R+   Y  G+GF
Sbjct: 31  RIIYQVIT---DRFAVDSDNTPDCSFDDSSYCGGTWSGIRSKLDYIQGMGF 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,963
Number of Sequences: 5004
Number of extensions: 31387
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)