Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1749
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    29   3.3  
06_03_0779 - 24529445-24529927                                         28   7.6  

>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 109 LLTHCFFSCGHLKHKINENILLHISLIFHLRXCHK 5
           +L + F   G L H I+EN   HISLI  LR  H+
Sbjct: 223 MLVYEFIPNGTLFHLIHENHGNHISLITRLRIAHE 257


>06_03_0779 - 24529445-24529927
          Length = 160

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 257 WFLQR**CGRGSLTNHRRTKRKPLQNWPTSM 165
           WF++   CGR    NHR     PL NW  S+
Sbjct: 59  WFVEIICCGRLPPDNHRIGTMVPLLNWVESL 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,594
Number of Sequences: 37544
Number of extensions: 204728
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)