Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1748
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.31 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.71 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   1.2  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    28   1.2  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   2.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.6  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   6.6  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   8.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   8.7  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
 Frame = +3

Query: 75  LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIK--LDNWYQNELPKK--IKSRGKDAH 242
           LE  +K+FD       Q+++   ++  ++ +EL K   D   ++ELP+K   +S  KD H
Sbjct: 13  LEYRSKKFDKK----SQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68

Query: 243 MIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQET 359
            +     + +K K+ +GK   +   L   N P+    ET
Sbjct: 69  SVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVET 107


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
 Frame = +3

Query: 198 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKK 365
           +EL   +++ G +A     E++++++     GK Y Q+   ++V T + V    ++E K+
Sbjct: 57  HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114

Query: 366 AFRKLPNIESAMTALSNLK 422
           AF    + E+   +L NL+
Sbjct: 115 AFELFDDDETGKISLRNLR 133


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 338 WRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHV 240
           WR+  Y I QL   F SGL   H  D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +3

Query: 84  NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 221
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 57  DTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKD 236
           D   +     A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D
Sbjct: 103 DIDDYRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLED 162

Query: 237 AHMIHEE 257
                EE
Sbjct: 163 FEAKIEE 169


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 39  TMATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPD---ELIKLDN---WY 194
           ++A +K +STF L+   K  D +L  Y + ++ +   +  RPD   +L  L N   WY
Sbjct: 107 SLALSKSSSTFDLQKIKKIHDCLLSEYRKYVRYQERIEETRPDLQKQLTDLKNPIEWY 164


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 597 EEQNGCGKKWFPHMVELXLWTHNIVSDLQPQLLGKEPNN 713
           + + G  + W  ++  L LW +  VSD + ++L  EP N
Sbjct: 681 QNETGLHRPWCLYVSTLILWAYGYVSDGRCEML--EPGN 717


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 89  CICLQKESRRVFRGSHCERSKCTTL 15
           C+C+ K +  +F G H    +C +L
Sbjct: 344 CVCVPKATHHIFSGGHDGTIRCWSL 368


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 708 WALSLITVVVSPIQCCASR 652
           W L+ + V VSPI C  SR
Sbjct: 921 WRLAAVLVAVSPILCLTSR 939


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 240 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 277



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 318 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 355



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 396 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 433



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 474 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 511



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 552 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 589



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 GFHTW*SWXSGRTTLYRTYNHSY*GKSPTTVRLQTGGSPFP 747
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P
Sbjct: 630 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYP 667


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -3

Query: 571 MWLTKLRYSLAV*SLPSISGIAWTHSSAINGAISGLTAANNADAVAVPTPLRLLRAVIAD 392
           +W+  +++     +LP  +  +  H  + N  +S + A+ NA        ++L R V+  
Sbjct: 142 VWVWDIKHPQQPFALPKQNRSSEVHVVSWNNKVSHILASGNATEYTTVWDVKLKRQVLNL 201

Query: 391 SILGS 377
           S LG+
Sbjct: 202 SYLGA 206


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +3

Query: 198 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRK 377
           +ELP+ I  +G +     E+L  L    QA  + Y    +  + +      ++  K F+K
Sbjct: 3   SELPEVI-FKGTE---FEEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKK 58

Query: 378 LPNIESAMTAL 410
             N+E+ ++AL
Sbjct: 59  DDNVETLLSAL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,404
Number of Sequences: 5004
Number of extensions: 72206
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)