Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1748
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    87   2e-17
03_05_1006 + 29635372-29635442,29635544-29635589,29635672-296358...    31   0.98 
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    29   5.2  
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   9.1  
12_01_1099 - 11575113-11575565                                         28   9.1  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    28   9.1  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 1/202 (0%)
 Frame = +3

Query: 72  FLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIH 251
           F   +A E+ + L  Y +  +L A  K   PD L+++D++Y+ +LP  ++ R  +  +  
Sbjct: 7   FASGDAAEWRAALAAYDR--RLAALGK---PD-LVEVDSFYRRDLPDLLRRRDPEPFLAK 60

Query: 252 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKXXX 431
            ELV+L++WK +RGK+ P+L   +K      V   + KAF  LP++  A+T L+ LK   
Sbjct: 61  PELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVG 120

Query: 432 XXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNG 611
                       P++APFM+DE + A       +YT ++YL F   ++     L+     
Sbjct: 121 PATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQTKSKELSS---- 175

Query: 612 CGKKWFPHM-VELXLWTHNIVS 674
            G++ F    VE  LW+  + S
Sbjct: 176 -GEEVFTTSDVERALWSSAVAS 196


>03_05_1006 +
           29635372-29635442,29635544-29635589,29635672-29635813,
           29635878-29636653,29636750-29637370
          Length = 551

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 517 SGIAWTHSSAINGAISGLTAANNADA-VAVPTPLRLLRAV-IADSILGSLRK 368
           SG AWTHS    G +   TA   A A  A P P R      + D+++G+  K
Sbjct: 174 SGQAWTHSGRAAGVLYVTTAGGGAAAEAAAPAPSRWEHIEGLVDAVMGAREK 225


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 475  ISGLTAANNADAVAVPTPLRLLRAVIADSILGSLRKAFFVSCITARGVFTFIRY 314
            ISGL   ++A A+     + LL+ + +  +LGS     F+S I  R V T   Y
Sbjct: 1334 ISGLKIPHDASAITPEAVISLLKCIRSWKMLGSALPDNFMSSINLRWVKTTAGY 1387


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 359 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 463
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>12_01_1099 - 11575113-11575565
          Length = 150

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 604 CSSFNLSQTFRMWLTKLRYSLAV*SLPSISGIAWTHSSAINGAISGLTAANNADAVAVPT 425
           CSS+ L ++ R W     YS A  +    +  A  ++S + GA+ GL +   A AVA P 
Sbjct: 20  CSSWRLVESVRAWY----YSAAGGAGAVAAWPAAFYASVMYGAVFGLLSMGAALAVAAPA 75

Query: 424 PL 419
            L
Sbjct: 76  ML 77


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 98  EFFCICLQKESRRVFRGSHCERSKC 24
           E +C C  K  +  FRG HC +S+C
Sbjct: 474 EKYCGC-SKSCKNRFRGCHCAKSQC 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,471,363
Number of Sequences: 37544
Number of extensions: 496185
Number of successful extensions: 1226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)