Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1747
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    26   2.5  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      24   7.6  

>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  PVPNKFRERTLS*FERKCASPVTRDSE 91
           PVP    +  LS FE+KC S +   SE
Sbjct: 34  PVPGPKHKDVLSLFEKKCRSVLDEQSE 60


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 125 LCNMCQTPAPRPPNHASREKRIFFQIKTMFVR 30
           LCN+   P PR P +A    RI   I    VR
Sbjct: 488 LCNIFALPVPRTPFYAGFGNRITDAISYNHVR 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,947
Number of Sequences: 5004
Number of extensions: 23924
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)