Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1747
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    27   3.7  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    27   3.7  
Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    26   8.7  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    26   8.7  

>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 158 GLCLAELNLIPLCNMCQTPAPRPPNHASREKRIFFQIKTMFVRGT-CW 18
           GL ++ELN+        TP P  P H SR  R+  Q    F  GT CW
Sbjct: 23  GLSISELNIDADLLKKLTPVPTVPAHISRTHRVGAQRYRQF--GTRCW 68


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -1

Query: 223 SHAKHIPSHFGVESG---SLHRTSQGCALQN*TLFPSATCVKLPRRGL--RITRHGRSAF 59
           S AK +  +   E G    LH  +  CA+   T F +   + L R G   + + HG ++ 
Sbjct: 189 SEAKTLVCNLDKECGFGCQLHHVTY-CAI---TAFATQRMMVLKRDGSSWKYSSHGWTSV 244

Query: 58  SFKLRQCSFAELVGHGRA 5
             KL +CSF E VG+  A
Sbjct: 245 FKKLSKCSFDEAVGNTEA 262


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -1

Query: 223 SHAKHIPSHFGVESG---SLHRTSQGCALQN*TLFPSATCVKLPRRGL--RITRHGRSAF 59
           S AK +  +   E G    LH  +  CA+   T F +   + L R G   + + HG ++ 
Sbjct: 189 SEAKTLVCNLDKECGFGCQLHHVTY-CAI---TAFATQRMMVLKRDGSSWKYSSHGWTSV 244

Query: 58  SFKLRQCSFAELVGHGRA 5
             KL +CSF E VG+  A
Sbjct: 245 FKKLSKCSFDEAVGNTEA 262


>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 254 RPACRAPLLPVTCQTYTQ 201
           +PA +APLLPVTC  Y++
Sbjct: 4   KPA-KAPLLPVTCSVYSK 20


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 358 SVTPPLSSAEPSGARPSARTTAS 290
           S++PP  SAEPS + PS ++  S
Sbjct: 20  SLSPPALSAEPSTSSPSKKSIGS 42


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 358 SVTPPLSSAEPSGARPSARTTAS 290
           S++PP  SAEPS + PS ++  S
Sbjct: 20  SLSPPALSAEPSTSSPSKKSIGS 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,035,852
Number of Sequences: 27780
Number of extensions: 147370
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)