Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1744
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +1

Query: 385 RLATYFL--LLKMSIFVYKLFSISCKLTPSIIDVHRCFATAGR 507
           R   +FL  +L  S FV    SI C     +I  H C    G+
Sbjct: 6   RCTFFFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRKICGK 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 338 VPENIQIISEFSGGHTPIANTAAPASCYSTGTCLRLCTC*STSADVSTSFCSLV 177
           VP N++ I      H P ++T+ PA+  +T T     T  + +A  +T+   L+
Sbjct: 82  VPGNLEQIGS-RPLHPPASSTSLPATITTTTTTTTTTTA-TAAATATTTATGLI 133


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 156 NPYPYSYNQGAEGSADVSGGAL 221
           NPYP +   G +G     GG L
Sbjct: 361 NPYPLNTTNGRKGLLKGGGGYL 382


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 403 LLLKMSIFVYKLFSISCKLTPSIIDVH 483
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 403 LLLKMSIFVYKLFSISCKLTPSIIDVH 483
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 67  NITCRVPTTRSTPMGMSHN 123
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 67  NITCRVPTTRSTPMGMSHN 123
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 67  NITCRVPTTRSTPMGMSHN 123
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 406 LLKMSIFVYKLFSISCKLTPSIIDVHRCFATA 501
           L+ + I  Y  F I C +   I+ ++   ATA
Sbjct: 278 LVGIIIMWYSPFGIMCLIAGKIMSINNLTATA 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,843
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)