Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1743
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    29   0.94 
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.8  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   8.7  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   8.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 2   TRKTLQXFCGXKDSVXIFGISAGSAS----VEYLQLSPSSRGLFQQAILQS 142
           T K ++ F G K+++ + GISAGS S    + Y    P +  + ++A+L S
Sbjct: 177 TYKHIESFGGNKENIAVGGISAGSYSALFQLIYETYHPEANQIIKRALLLS 227


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 408 W*GYSVRKASPLPKSFSTDGTKPNFVPLKXEDFE 307
           W  + ++ +  +P SFS D  KP+F       F+
Sbjct: 161 WVSFQIKSSFSIPTSFSNDLKKPSFNSFSSGSFD 194


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 IKELGFKMANDLGYXETKGDHRAIYNFI 262
           IKEL  +   D+   + KGDHRA+ + +
Sbjct: 138 IKELAKRWCPDIPAYDKKGDHRALSDIL 165


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 GTKFGFVPSVEKDFGNGDAF 388
           G + G+ PS  +DFG+G AF
Sbjct: 47  GQRKGWFPSSPEDFGDGGAF 66


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 114 DYFNRQYYNLDPXSITGPLNMTSKNLDS 197
           DYF   + N+   + +G LN+   NLD+
Sbjct: 3   DYFAWDFANISGSNTSGSLNLNQLNLDN 30


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 402 GYSVRKASPLPKSFSTDGTKPNFVPLKXEDFEYFNTTSLSS 280
           G  + K +P+   FS  G   N V    EDF   NTT   S
Sbjct: 514 GSDLLKLNPVHPPFSLPGDVDNKVYSYPEDFNATNTTEYKS 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,626
Number of Sequences: 5004
Number of extensions: 55994
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)