Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1739
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 61 9e-10
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 61 9e-10
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 61 9e-10
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 61 9e-10
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 61 9e-10
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 61 9e-10
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 61 9e-10
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 61 9e-10
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 48 7e-06
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 37 0.012
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 35 0.066
AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical ... 31 1.1
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 28 7.6
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 28 7.6
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIV 153
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIV 153
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 56 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 86
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 84 FNTPAMYVAIQAVLSLYASGRTTGVV 109
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 86 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 116
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 114 FNTPAMYVAIQAVLSLYASGRTTGVV 139
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPKANREKMTQIMF +T
Sbjct: 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 619 FNTPAMYVAIQAVLSLYASGRTTGIV 696
FNTPAMYVAIQAVLSLYASGRTTG+V
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGVV 153
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMFRNIST 625
EEHPVLLTEAPLNPK+NREKMTQIMF +T
Sbjct: 99 EEHPVLLTEAPLNPKSNREKMTQIMFETFNT 129
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1
Query: 562 SPQPQGQQREDDPDHVSKHFNTPAMYVAIQAVLSLYASGRTTGIV 696
+P RE + + FNTPAMYV IQAVLSLYASGRTTGIV
Sbjct: 108 APLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIV 152
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 580 QQREDDPDHVSKHFNTPAMYVAIQAVLSLYASGRTTGIV 696
+ RE + + FN PA+Y+ +QAVLSLYA+GRTTG+V
Sbjct: 118 KNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVV 156
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 521 KYFNEEHPVLLTEAPLNPKANREKMTQIMFRNIS 622
K F EEHPVLLT+APLNP NRE+ +I F +
Sbjct: 99 KIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFN 132
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 533 EEHPVLLTEAPLNPKANREKMTQIMF 610
+E +LLTE PLNP +NREKM Q+MF
Sbjct: 103 KECKLLLTEPPLNPNSNREKMFQVMF 128
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 631 AMYVAIQAVLSLYASGRTTGIV 696
++YVA+QAVL+LYA G TG+V
Sbjct: 135 SIYVAVQAVLTLYAQGLLTGVV 156
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 536 EHPVLLTEAPLNPKANREKMTQIMF 610
EHPVL +E+ N +A REK+T+IMF
Sbjct: 123 EHPVLFSESSWNDRARREKLTEIMF 147
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 583 QREDDPDHVSKHFNTPAMYVAIQAVLSLYASGRTTGIV 696
+RE + + + F PA Y++ VLS +A GRT G++
Sbjct: 138 RREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLM 175
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 518 FKYFN---EEHPVLLTEAPLNPKANREKMTQIMFRNIS 622
FKY E+H LLTE PLN NRE +IMF + +
Sbjct: 105 FKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFN 142
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 580 QQREDDPDHVSKHFNTPAMYVAIQAVLSLYAS 675
+ RE + + + FN P +Y+A+QAVL+L AS
Sbjct: 128 ENREYTAEIMFESFNVPGLYIAVQAVLALTAS 159
>AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical
protein Y53H1A.5 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 542 PVLLTEAPLNPKANREKMTQIMFRNISTRPPCTSPSKPCSRCTRPV 679
P + + AP PKA R T M R ++ PP P P + RPV
Sbjct: 214 PSISSAAPSPPKAPRAPTTYAMIRPATSHPPVNIPKAP-AMTYRPV 258
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 421 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 317
+P+ V+ ++ PS +S + VTT V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 527 FNEEHPVLLTEAPLNPKANREKMTQIMFRNISTRPPCTSPSKPCSRCTR 673
F E + EA LN + M QI + S PP PS+PC C +
Sbjct: 294 FEREEAMRAREATLNTTP-QSSMAQIK-QEPSYIPPPIDPSRPCDSCEK 340
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 56 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 160
D+ G++ WF +++SV WI +V+ I +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,779
Number of Sequences: 27780
Number of extensions: 370323
Number of successful extensions: 1176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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