Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1737
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.6  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.9  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   3.8  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.0  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   6.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   6.6  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   8.7  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 559 PDNRTLTLKARVKAIRENWNLKYSATYVLCLLKDSGVKP 675
           PD        + K  + N NL+YS    +C + D  +KP
Sbjct: 506 PDTENQESSVKNKKAKSNVNLQYSPKTPICKINDETLKP 544


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 652 ANTERTLHCILNSNFLL 602
           AN +  LHC+L  NFLL
Sbjct: 6   ANAKHKLHCLLKKNFLL 22


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +2

Query: 347 GKVERKRGQRAASHYRQRTYPLMQ-FGNQSPVLDFGFTFIRLTWNVGR*PRCE*SQRQKR 523
           G  ++  GQ   +  ++  Y   +  G    ++ + F F+   W +     C  +   K 
Sbjct: 136 GWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKT 195

Query: 524 AEPTPSSAAC 553
           AE TP SA C
Sbjct: 196 AELTPLSALC 205


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 432 DWLPNCINGYVRW 394
           D+ PNC NGY+ W
Sbjct: 291 DFEPNCTNGYLTW 303


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 526 GADPVICRLWLPDNRTLTLKARVKAIRENWNL 621
           GADPV+   WL +  TL +K  ++    N N+
Sbjct: 388 GADPVLVDKWLENPETLEVKEVLEKRYANLNI 419


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 483 PTFHVSRINVKPKSSTGDW 427
           P+   + I VKP+S  GDW
Sbjct: 283 PSLEATPITVKPESEMGDW 301


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 424 AKLHQWVCSLAVVARRPLTPFPFDLARSACLHCSESERVRWVAPGVTIQ 278
           +KL   V  L +V    L   PF+       +CS  E  + VA GVT++
Sbjct: 382 SKLRHLVTRLELVDAIALA-HPFNKGFDKVYNCSSEEEAQQVASGVTLE 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,465
Number of Sequences: 5004
Number of extensions: 57215
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)