Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1737
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    29   3.0  
01_06_1313 - 36212524-36213669                                         29   3.9  
07_03_0907 - 22490158-22490555,22490647-22491250                       28   6.9  
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    28   9.1  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   9.1  

>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 367 GSEGGEPLPPANIPIDAVWQPVAGTR 444
           G  G EP PP   P +++W P+   R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 698 MDPPTXSCGFTPESFSKHRTYVALYFKFQFSLIALTRALSVSV 570
           M PPT S      SF  HR+ V  +F     L+A   AL V V
Sbjct: 233 MAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKV 275


>07_03_0907 - 22490158-22490555,22490647-22491250
          Length = 333

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 310 PARTRYNEDMQTWQ---GRTETGSEGGEPLPP 396
           P   R+ +   TW+   GR ++GS GGE  PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262


>12_01_0991 -
           10057736-10058249,10058412-10059241,10059266-10060633,
           10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 293 RSNNSVSTMTPNTAKNMMKMKKLILARSLAREDIARALHFIVPTLISHGHWTK 135
           + NN +STM P++ KN+  +K L L  +    DI   +       + + HW K
Sbjct: 583 QGNNLMSTMIPSSFKNLCNLKVLDLRSTNTTGDIRELIE-----KLPNCHWNK 630


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 664 GVKPQXXVGGSISVIASASP-NRPP 735
           GVK +  +  S+S IA A+P NRPP
Sbjct: 177 GVKTEGGLNASVSFIAKANPLNRPP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,322,406
Number of Sequences: 37544
Number of extensions: 445318
Number of successful extensions: 1275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)