Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1737
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 113 GARVSGRFSSSAHVILMSAR*SGERARYLLAPKNAPI 223
           G    G F++  H  L+S   SG+       P N P+
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPL 103


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 113 GARVSGRFSSSAHVILMSAR*SGERARYLLAPKNAPI 223
           G    G F++  H  L+S   SG+       P N P+
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPL 103


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 480 SDGSRGANNRSDKNARSRPRH 542
           S GSR  +N  +KN R+  R+
Sbjct: 46  SQGSRTTHNELEKNRRAHLRN 66


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 613  WNLKYSATYVLCLLKDSGVKPQXXVGGSISVIASASPNRPPT 738
            +NL+ + TY L ++ ++ +           + A  +P+ PPT
Sbjct: 940  FNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPT 981


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,703
Number of Sequences: 438
Number of extensions: 4943
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)