Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1735
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 83 4e-17
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 27 2.9
SPAC1782.03 |||microfibrillar-associated protein family protein|... 27 3.8
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 3.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.6
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.6
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 83.0 bits (196), Expect = 4e-17
Identities = 47/122 (38%), Positives = 64/122 (52%)
Frame = +3
Query: 384 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 563
KSIR AF+RKVYAIL QL VT F +F H WV +P+ + F + +V L +
Sbjct: 52 KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111
Query: 564 ACCPDVRRKAPTNFIFLAIFTAAQSFLLGISASVYQADAVLMAVGITAAXCLGLTLFALX 743
P P N+IFL +FTA + LG + + + A +L AV IT + LT F
Sbjct: 112 IMKP---YSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQ 168
Query: 744 TK 749
+K
Sbjct: 169 SK 170
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 617 GQEYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHP 495
GQ E +++ SH+ R + + Q + + H G HP
Sbjct: 155 GQGSEPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSHP 195
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/80 (23%), Positives = 31/80 (38%)
Frame = +2
Query: 53 GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTIPTGWRLPARWSLPSRRSVSP 232
G L + L + + P VP ++ + TIPT +P S P+ S+
Sbjct: 76 GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
Query: 233 GWSIPAGRICAPSAWLPTCI 292
+IP+ + S T I
Sbjct: 136 NSTIPSSSSISASTITTTII 155
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 47 GF-GKTKLEGPTKLREHVSESRRTVPSGRG--VPARWTVPARWTIPTGWRLPARWSLPSR 217
GF G++ L+ V+ SR ++PS V ++ +P+RW R+ W +P
Sbjct: 320 GFRGESDLDDEYIYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAPVWMIP-- 377
Query: 218 RSVSPGWSI 244
GWS+
Sbjct: 378 ---DVGWSL 383
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +2
Query: 164 WTIPTGWRLPARWSLPSRRSVSPGWSIP 247
W + + +P+RW + ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 506 KSLHVLGGLHSADSLSHR 559
K+LH LGGLHS LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/52 (21%), Positives = 21/52 (40%)
Frame = -2
Query: 530 GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFFSE 375
G+P+ ++ + E+ ET RH H + + S +Y F +
Sbjct: 122 GYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFED 173
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 281 EARLRGRISALRVCSTRGIRSSWRVSSTLRVASTLWVWSTLRV 153
EA++R R++ + + RG+ + +++A LWV + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 579 VRRKAPTNFIFLAIFTAAQSFLLGISASVY 668
+RR + +F ++ T Q+FL+ ++ VY
Sbjct: 310 IRRTSKKMVLFFSLLTCGQAFLVNVAPMVY 339
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 55 KN*TRRTNQITRACI-RIKADRTLRAGRTRKVDRTRKVDHTHRVEATRKVE 204
KN T+ ++++ + R+K + AGR ++ + R+ + E RK+E
Sbjct: 23 KNETQEQPVLSKSALKRLKRQQEWDAGREKRAEMRREKKRLRKEERKRKIE 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,774
Number of Sequences: 5004
Number of extensions: 62096
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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