Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1735
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.76 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
 Frame = -2

Query: 545 YQHYEG--HPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESP 396
           +QH+    HP H G   H   G   +       H HH    Q   HL    P
Sbjct: 319 HQHHPSQYHP-HRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQP 369


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 112 DRTLRAGRTRKVDRTRKVDHTHRVEATRKVELTLQEERIPRVE 240
           DRT +     ++DR  +VD    ++ T K+    + +R+ RV+
Sbjct: 433 DRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVD 475



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 KADRTLRAGRTRKVDRTRKVDHTHRVEATRKVE 204
           + D   R  +  ++DR  K+D   R++ T +++
Sbjct: 500 RMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMD 532


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 539 HYE--GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESP 396
           HYE      H   L  P   R +   QS     HHQ+ +Q   +L  E+P
Sbjct: 45  HYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENP 94


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = -2

Query: 539 HYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDR 420
           H++ H +H  +       +S  Q+Q  + H  H +  Q +
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQ 208


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 420 AILMCQ-LMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLI 557
           A++ C  ++ TM    L  +HR T V  A    +  +    ++VC +
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYL 566


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 420 AILMCQ-LMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLI 557
           A++ C  ++ TM    L  +HR T V  A    +  +    ++VC +
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYL 656


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 720 PGTRPXLCQLPSAPHPLGRRL 658
           PG+ P +  +PS   P+ RR+
Sbjct: 436 PGSMPTMPTMPSMAGPIRRRI 456


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 531 FIVLIVCLIAMACCPDVRRKA 593
           FI+L+  +    C P+V+++A
Sbjct: 4   FIILLALVALGVCAPNVKQRA 24


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 735 RTESGPGTRPXLCQL 691
           R  +G GTR  +CQL
Sbjct: 668 RLPNGEGTRADICQL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,612
Number of Sequences: 438
Number of extensions: 4717
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)