Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1734
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.9  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.0  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.6  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   8.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.7  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   8.7  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   8.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 724 ALLSPLWARLCS-DPHVSRRSFTAFNLSSAVVNVKN 620
           A+  PLW+   + DPH S RSF    L+S+  ++KN
Sbjct: 299 AISYPLWSNSETWDPHRSIRSFNLDLLNSSFFSLKN 334


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 489 KDTESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNNNFAV 611
           KDT  D+       P H   + LK+N GVE L     N  V
Sbjct: 637 KDTVFDIIKQVETDPDHLKFKILKKNLGVEYLESYGLNIRV 677


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 117  DYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGLNRVITT 254
            D + + D+   ++RT+R L+DS++ L       S+  + L  V+T+
Sbjct: 1633 DLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTS 1678


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
 Frame = -3

Query: 322 PFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD-----RLSCSILTV 158
           PF +  +  ++TTC+G+RR     +         D Y+    ++       R S   L+ 
Sbjct: 625 PFVSFQTAMLHTTCNGERRIRVLTISLPTTNSMTDLYASADQVAIAQYLTVRASEKALSS 684

Query: 157 LMFPSKVSVI-KL*SMRVISSLNISFTGTIHSI-VQISTNL 41
            +  ++ S+I KL  +  +   N++   T  +I +QISTNL
Sbjct: 685 TLNEARDSIISKLVEILEVYKKNLAGQNTGAAIPLQISTNL 725


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 401 LAHLFLVVEQKQVLATNLQHADCLALTVFCILVFKDIHNMRWAEAKFFP 255
           +A+ FL  +  Q   +  Q+    ++ +F       I N+ W +A+ FP
Sbjct: 414 IAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIGNIPWQQAELFP 462


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 36  LYKFVEICTMEWMVPVNEML 95
           LYK +E C M++ +P+  +L
Sbjct: 714 LYKILEACFMQFRIPIQHVL 733


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 525 DGPSHK-MEQFLKRNYGVERLVRQNNNFAVSPKFFTF 632
           D   HK ++ F   NY  E+L+ Q  N   S  FF +
Sbjct: 177 DPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAY 213


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
 Frame = -2

Query: 611 NSEIVVLADETLHAVVALQELLHLVRGPVD-G*CVDVA---LRVLEHEIEKFLPASGALA 444
           NS   V+ D + H+V   +   H    PV+    +D+    L +LE +    +P  G L 
Sbjct: 218 NSSSSVIPDSSFHSVACYRASSHYKEAPVEKSIDIDIIQNNLSLLEEDSWTSVPIQGELV 277

Query: 443 ----VADHVEVEDAERLQLAHLFLVVEQKQV 363
               +  H+++   +R+  +H  L  E++Q+
Sbjct: 278 ELNKLLQHLQLLQNQRI-TSHNVLSDEERQI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,403
Number of Sequences: 5004
Number of extensions: 55465
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)