Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1734
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    29   3.9  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           29   3.9  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    28   6.9  
05_07_0081 - 27572047-27572925,27573285-27573419                       28   6.9  
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    28   6.9  
03_05_0135 + 21154421-21154703,21154985-21155103,21155228-211554...    28   9.1  

>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 455 RMREETFRFHAQGHGERRPRTSHRRALAQDGAVPEAQ 565
           R   ET   H Q H +  PRT  R + A  G + E Q
Sbjct: 187 RREAETAHPHTQPHSDLSPRTPRRTSAAASGRLQEKQ 223


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 249 TTGEKLRLCPSHVVYILKDKDAKNGEGEAV 338
           T  EK RL PS+  Y L+ ++AK  EG+ V
Sbjct: 364 TKPEKRRLAPSNYRYFLRGQNAKAKEGDLV 393


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 495 TESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNN 599
           +E  +    I+G SH ME+  ++N  +E L+ +NN
Sbjct: 517 SERSMFIARIEGISHTMEKLSEKNVFLENLLSENN 551


>05_07_0081 - 27572047-27572925,27573285-27573419
          Length = 337

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 741 SSWDGLPCCPRXGRGSAPTRTCLGDHSLPLI*ARP 637
           + WDGL C P       PT   L  HS PL+ ++P
Sbjct: 36  AGWDGLGCSPGPRGPHKPTSNLLPPHS-PLLPSQP 69


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 358 RPIFSMPTASPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD 185
           R  +S    SPSP+    S   Y T   +RRS+S    +R R  +   Y    S S+D
Sbjct: 180 RQSYSPYGRSPSPYGRRRSYSPYDTRGSRRRSYSSYRGSRYRSRSPYRYRRERSCSYD 237


>03_05_0135 +
           21154421-21154703,21154985-21155103,21155228-21155458,
           21155779-21156028,21157496-21157716
          Length = 367

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 726 LPCCPRXGRGSAPTRTCLGD 667
           L CCP   RG+AP    LGD
Sbjct: 27  LACCPTRARGAAPAVYVLGD 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,740,195
Number of Sequences: 37544
Number of extensions: 411009
Number of successful extensions: 1176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)