Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1734
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   7.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   7.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 205 WENIHQLHKASTV*SLLGKNFAS 273
           WE +H  H  ST+ S  G  F +
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTT 230


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 473  FRFHAQGHGERRPRTSHRRALAQDGAVPEAQLRR 574
            F F A  H   R RT+    +  + A PE +L R
Sbjct: 1143 FEFRAALHEALRGRTAQLIIVQAENAYPEVELDR 1176


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 304 SLRIYTTCDGQRRSFSPVVITR 239
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 304 SLRIYTTCDGQRRSFSPVVITR 239
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 378 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 467
           D+K ++   +P    DFY +   + T  GK
Sbjct: 17  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 46


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 378 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 467
           D+K ++   +P    DFY +   + T  GK
Sbjct: 32  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 61


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 748 PXLELGRSALLSPLWARLCSDPHVS 674
           P L+LG+   L   W+R+    H +
Sbjct: 376 PSLDLGKEGGLEAQWSRVLGRVHAT 400


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 712 PLWARLCSDPHVSRRSFTAFNLSSAVVNVKN 620
           P W    ++  VS  +  AFN+S+ +   +N
Sbjct: 614 PQWHTRSTEKRVSAGTPAAFNISTTIYENQN 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,592
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)