Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1733
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   180   9e-47
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   180   9e-47
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    46   5e-06
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.8  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  180 bits (439), Expect = 9e-47
 Identities = 82/124 (66%), Positives = 103/124 (83%)
 Frame = +3

Query: 6   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 185
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 186 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 365
            GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKF
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKF 126

Query: 366 GGPG 377
           GG G
Sbjct: 127 GGHG 130


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  180 bits (439), Expect = 9e-47
 Identities = 82/124 (66%), Positives = 103/124 (83%)
 Frame = +3

Query: 6   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 185
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 186 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 365
            GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKF
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKF 126

Query: 366 GGPG 377
           GG G
Sbjct: 127 GGHG 130


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 38/122 (31%), Positives = 56/122 (45%)
 Frame = +3

Query: 9   GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 188
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 189 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 368
           GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 369 GP 374
            P
Sbjct: 120 QP 121


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 DTXNLTVKPSRKPSGGIVAAXCCH 459
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 75   RLHAAFHDHACNTQLRWRFS 16
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 218 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 307
           Y   YF G D   PE C        QRH S
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,891
Number of Sequences: 5004
Number of extensions: 35692
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)