Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1732
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 384 e-107
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 384 e-107
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 384 e-107
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 81 6e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 61 9e-10
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 56 2e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 56 2e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 56 2e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 56 2e-08
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 1e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 50 1e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 50 1e-06
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.79
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 1.4
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 1.8
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 4.2
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 4.2
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 4.2
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.6
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.6
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.6
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 384 bits (944), Expect = e-107
Identities = 175/227 (77%), Positives = 195/227 (85%)
Frame = +3
Query: 18 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPA 197
KIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 146 KIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQ 205
Query: 198 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEAL 377
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L
Sbjct: 206 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 265
Query: 378 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 557
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTP
Sbjct: 266 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 325
Query: 558 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGXAXIXNLVP 698
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSG A I L+P
Sbjct: 326 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 372
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 384 bits (944), Expect = e-107
Identities = 175/227 (77%), Positives = 195/227 (85%)
Frame = +3
Query: 18 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPA 197
KIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 180 KIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQ 239
Query: 198 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEAL 377
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 378 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 557
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTP
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 359
Query: 558 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGXAXIXNLVP 698
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSG A I L+P
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 406
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 384 bits (944), Expect = e-107
Identities = 175/227 (77%), Positives = 195/227 (85%)
Frame = +3
Query: 18 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPA 197
KIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP
Sbjct: 180 KIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQ 239
Query: 198 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEAL 377
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 378 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 557
EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTP
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 359
Query: 558 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGXAXIXNLVP 698
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSG A I L+P
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 406
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 81.4 bits (192), Expect = 6e-16
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 2/208 (0%)
Frame = +3
Query: 18 KIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 194
K+G+NP + +VP SG G + + T W G C IE +D +LP
Sbjct: 282 KLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG--NWY--------SGPCFIEFIDVLLPS 331
Query: 195 -ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 371
R + P+R + + Y +GTV +G++E+G ++ G +V P +V +
Sbjct: 332 YKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDV 389
Query: 372 ALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGY 551
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY
Sbjct: 390 ETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGY 448
Query: 552 TPVLDCHTAHIACKFAEIKEKVDRRTGK 635
+ VL +A + +D++TG+
Sbjct: 449 SCVLHIQSAVEEVTVKGVIATIDKKTGE 476
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/216 (20%), Positives = 98/216 (45%), Gaps = 1/216 (0%)
Frame = +3
Query: 48 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 227
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 228 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 407
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 397 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 455
Query: 408 FNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 584
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 456 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 515
Query: 585 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGXAXIXNL 692
C F + +++ G+ + P+ I G + + +
Sbjct: 516 PCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEI 551
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/216 (20%), Positives = 98/216 (45%), Gaps = 1/216 (0%)
Frame = +3
Query: 48 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 227
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 228 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 407
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 415 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 473
Query: 408 FNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 584
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 474 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 533
Query: 585 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGXAXIXNL 692
C F + +++ G+ + P+ I G + + +
Sbjct: 534 PCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEI 569
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 60.9 bits (141), Expect = 9e-10
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Frame = +3
Query: 213 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 380
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 381 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 560
G + F +K + K++R+G V D K P F A+++VL+HP I Y +
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAM 490
Query: 561 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 665
L + + ++V RTG +V K I+
Sbjct: 491 LHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Frame = +3
Query: 213 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 380
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 381 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 560
G + F +K + K++R+G V D K P F A+++VL+HP I Y +
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAM 491
Query: 561 L 563
L
Sbjct: 492 L 492
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Frame = +3
Query: 141 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 311
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 284
Query: 312 VVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 479
+ T VKSV E + + +A PGD +G ++ + K++RRG V + +
Sbjct: 285 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHK 343
Query: 480 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 584
K AQ+ VL TP+ + + H+
Sbjct: 344 HKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Frame = +3
Query: 141 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 311
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 312 VVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 479
+ T VKSV E + + +A PGD +G ++ + K++RRG V + +
Sbjct: 286 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHK 344
Query: 480 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 584
K AQ+ VL TP+ + + H+
Sbjct: 345 HKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Frame = +3
Query: 141 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TI 311
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G I
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 312 VVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 479
+ T VKSV E + + +A PGD +G ++ + K++RRG V + +
Sbjct: 286 EIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHK 344
Query: 480 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 584
K AQ+ VL TP+ + + H+
Sbjct: 345 HKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 377
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/74 (43%), Positives = 37/74 (50%)
Frame = +1
Query: 64 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 243
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 244 KSVVLVPCPSAELK 285
+S L P S L+
Sbjct: 238 RSEELEPSQSDVLR 251
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +3
Query: 105 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 275
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 276 RVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 449
+E GVLK G V + T +++ ++++E GD+ G + V ++RG
Sbjct: 260 TLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRG 319
Query: 450 YVAG 461
AG
Sbjct: 320 MWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +3
Query: 105 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 275
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 276 RVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 449
+E GVLK G V + T +++ ++++E GD+ G + V ++RG
Sbjct: 260 TLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRG 319
Query: 450 YVAG 461
AG
Sbjct: 320 MWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 213 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQ 380
P ++++Y + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 381 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 527
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 183 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 362
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 363 HHEALQEAVPGDNVGFNV 416
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 183 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 362
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 363 HHEALQEAVPGDNVGFNV 416
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.79
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -1
Query: 520 STMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPG-TASWRASWCISTDLT 344
ST T A+ + P ++ P + FT +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 343 SVVMLAGAKTTMVPGFN--TPVSTLPTGTVPIPPILY 239
V + + VP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.4
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Frame = -1
Query: 646 TSVDLPVRRSTFSLISANLQAMWAVWQSNTGV*PFEI*PGWLSTMT*AVKSAAPLGGLFL 467
T+ P S F A A A ++TG F G ST T A S AP GGLF
Sbjct: 412 TTTSAPATGSLFGTAPATTTATSAAPAASTGG-LF----GASSTTTPA--STAPTGGLFG 464
Query: 466 ESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CISTDLTSVVMLAGAKTTMVPGF 296
+ T P + T F T +P T +T + L +T+
Sbjct: 465 AATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATP 524
Query: 295 NTPVSTLPTGTVPIP 251
+ P +T T T+P P
Sbjct: 525 SLPTTTSTTSTLPKP 539
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -1
Query: 511 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 332
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 331 LAGAKTTMVPGFNTPVSTLPT 269
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 297 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 422
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 439 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 263
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 262 VPIPPILYTSCRGRRRGL 209
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 439 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 263
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 262 VPIPPILYTSCRGRRRGL 209
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 376 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 197
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 196 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 77
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 376 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 197
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 196 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 77
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 439 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 263
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 262 VPIPPILYTSCRGRRRGL 209
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 561 LDCHTAHIACKFAEIKEKVDRRTGKSTE 644
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 561 LDCHTAHIACKFAEIKEKVDRRTGKSTE 644
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 561 LDCHTAHIACKFAEIKEKVDRRTGKSTE 644
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 313 TMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRM 182
++V G N + +PT T P+ P + +S R +R S G M
Sbjct: 332 SLVEGLNGSPTPIPTVTDPVNPTVNSSTRRKRHSSSKSSNGKSM 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,116
Number of Sequences: 27780
Number of extensions: 416170
Number of successful extensions: 1323
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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