Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1731
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   4.1  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    26   5.4  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   7.2  

>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 250 KKFDRMNNKVEENMKELQLK*SHKNTTSSGSCVPHILVRCR 128
           K  D  NN+   N KE+  K S   TT+    VP  L+R R
Sbjct: 86  KNDDNSNNQNPSNNKEMSDKESDSATTTQTFSVPEELLRAR 126


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 365 KSPSLVKIKTCQNDRIRPDVATLKNANLKGQCFKRVLYAIEHYLFIPT 508
           K P+     T ++DRI   +ATL   N     F R+   IE Y  +PT
Sbjct: 252 KYPTNFSYSTARDDRITGSLATLLRLNFSSTHFLRL---IEFYWGVPT 296


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 SPSLVKIKTCQNDRIRPDVATLKNANLK 451
           SPSL+ +K  QN+ IR +     N+N K
Sbjct: 532 SPSLLSVKKRQNNHIRSNTLIQLNSNSK 559


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 250 KKFDRMNNKVEENMKELQLK*SHKNTTSSG 161
           K FDR +N V EN+KE+    + K  T+SG
Sbjct: 58  KAFDRHSNMVLENVKEMW---TEKKRTASG 84


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 44  TILRASSSSTISLGRLIFFFATS-RRIHVPAAYKNMGNATARTSRIF 181
           ++ +A   S + L R + +  T  R  HV  A KN GN     ++ F
Sbjct: 2   SVSKARLQSVVRLSRTVPYSKTMVRSFHVSCAVKNSGNVPTPRNKSF 48


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 371 PSLVKIKTCQNDRIRPDVATLKNANLKGQCFKRVL 475
           P L K K C     RP VAT    N+  QC + ++
Sbjct: 325 PKLTKFKDCITSFYRPSVAT----NICDQCLEAII 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,209
Number of Sequences: 5004
Number of extensions: 56159
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)