Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1731
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938...    29   2.4  
08_02_1212 - 25325911-25327047                                         28   5.6  
05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240           28   7.4  
04_03_0626 + 18135267-18136304                                         28   7.4  
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385     27   9.8  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    27   9.8  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    27   9.8  

>08_01_0945 +
           9376997-9377818,9378065-9378373,9379510-9379800,
           9380060-9380173,9380280-9380981
          Length = 745

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 195 LNRVTKIRLVRAVAFPIFLYAAGTWILREVAKKKIRRPRDMVLEEDARS 49
           L  V  +R  RAV    +L AAG W +     +++RR RD   E DA +
Sbjct: 56  LTWVLLLRAHRAVGCVAWL-AAGFWAVLGAVNRRVRRSRDADAEPDAEA 103


>08_02_1212 - 25325911-25327047
          Length = 378

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 453 PFKLAF-FSVATSGRMRSFWQVLIFTKLGDFSVRYTLCSPPVPSTWKYSPQDG 298
           PF LA  F++ +       + +L+  +LGDFS+ +TL S P P        DG
Sbjct: 86  PFSLAAEFNLLSGNPGSPAFFLLLKPRLGDFSLSHTLRSSPHPGNKVGEVSDG 138


>05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240
          Length = 142

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 171 LVRAVAFPIFLYAAGTWILREVAKKKIRRPRDMVLEEDARS 49
           +V   A  +F Y    W++ E+  K ++ P+     E+A S
Sbjct: 67  IVTVCALMLFFYFVSNWVVPELIMKDLQEPKKAEESEEAAS 107


>04_03_0626 + 18135267-18136304
          Length = 345

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 320 HVLGTGGEQSV*RTEKSPSLVKIKTCQ 400
           H++G GG+ +V R E   ++V IK C+
Sbjct: 28  HIVGEGGQGTVYRAEIDGTIVAIKRCK 54


>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
          Length = 157

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 405 SFWQVLIFTKLGDFSVRYTLCSPPVPSTWKYS 310
           ++W+V + T+ G      TLC PP+ + W ++
Sbjct: 11  TYWEVFLVTEFG----MPTLCLPPIATYWSHA 38


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 495 YLSQQCARYGLKCRYL-PDPKLSLSLEHQVRVC 590
           +L  +CAR  ++C+Y  P P +++  + +V  C
Sbjct: 112 FLRDRCARADIECKYAHPHPTVAVDRDSKVTAC 144


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 67  QHHISRASYLLLRHFPQDPRSCSVQEYGERN 159
           Q   SR +  L + FPQD  SC   E G+ N
Sbjct: 625 QSKSSRWNLRLRKDFPQDQSSCCYDECGDEN 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,876
Number of Sequences: 37544
Number of extensions: 370431
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)