Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1731
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical ...    30   1.6  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    29   3.8  
U41276-4|AAA82468.1|  272|Caenorhabditis elegans Temporarily ass...    28   5.0  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z99284-1|CAB16541.2|  607|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical
           protein C35A11.3 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 604 IITDVHTRT*CSNDKLSFGSGKYRHLXPYLAH-CWDK 497
           +I D   +  C+NDK      +YR +  ++ H CWD+
Sbjct: 212 VILDASQKNNCANDKADCLPFEYRDINAFIYHICWDR 248


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 256 KQKKFDRMNNKVEENMKELQLK*SHKNTTSSGS 158
           + K+F+   + +EE +KEL+L  +  N T+ GS
Sbjct: 149 QMKEFEAQKHAMEERIKELELSATDANNTTVGS 181


>U41276-4|AAA82468.1|  272|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 303 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 282 LKTNGFHLAESTSMCWVL--VANKVYSVRRSHLV 377
           +KTNGFH   S+S  WV   V  KV+   RS L+
Sbjct: 69  VKTNGFHYGSSSS-SWVRLNVGGKVFQTTRSTLM 101


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 265 TGTKQKKFDRMNNKVEENMKELQLK 191
           T  K++K +R+N ++ EN+++L LK
Sbjct: 107 TFVKEEKLERINEEMSENLRKLALK 131


>Z99284-1|CAB16541.2|  607|Caenorhabditis elegans Hypothetical
           protein Y7A9A.1 protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 444 LAFFSVATSGRMRSFWQVLIFTKLGDFSVRYTLCSPPVPSTW 319
           LA   + T   +R++   ++ T   D   +Y +C PP PS+W
Sbjct: 282 LANGGIITIDDLRNYRTHVMETLYADLG-KYRICGPPPPSSW 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,717
Number of Sequences: 27780
Number of extensions: 322960
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)