Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1729
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 59 5e-10
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 46 4e-06
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 46 5e-06
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 33 0.029
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 32 0.067
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.36
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 2.5
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 27 3.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 3.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 4.4
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 4.4
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 4.4
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 26 5.8
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 26 5.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.8
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 7.7
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 59.3 bits (137), Expect = 5e-10
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 153 PEESFTRV--YTFNSVRKSMSTVIPHNGGYRLYTKGASEIVLKKCAFIYGHEGRLEKFTR 326
P E+++R+ +F+S RK MS + +N + KGA+E VL CA+ +G + T
Sbjct: 421 PRETYSRISEVSFSSERKYMSVAVQYNSSKMNFMKGATEQVLSSCAYFSDQDGVQHELTA 480
Query: 327 DMQERLVRQVIEPMACDGLRTISVA 401
+M+E + R E MA GLR I+VA
Sbjct: 481 EMKENIQRNEFE-MAASGLRIIAVA 504
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 517 GSRTP*GPRFQRPXRKCQXAGITVPMVTGDNVNXARSIAMKCGILRPTD 663
G P P+ + + G+ V M+TGD+V A SIA G+ P++
Sbjct: 519 GINDPPRPQVRESVQYLMTGGVRVIMITGDSVVTAISIARSLGMAIPSN 567
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 46.4 bits (105), Expect = 4e-06
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Frame = +3
Query: 162 SFTRVYTFNSVRKSMSTVIP-HNGGYRLYTKGASEIVLKKCAFIYGHEGRLEKFTRDMQE 338
+F R Y F+S K M+ + G Y +Y KGA E +L++C+ G LE+ R++
Sbjct: 490 TFVREYPFDSEIKRMAVIYEDQQGQYTVYAKGAVERILERCSTSNG--STLEEPDREL-- 545
Query: 339 RLVRQVIEPMACDGLRTISVAYRDFVPGKADINQVHVDXEPHWD--DEDXIVNNLTCLCV 512
++ Q +E +A +GLR +++A + V KAD +W+ D ++L + +
Sbjct: 546 -IIAQ-METLAAEGLRVLALATK--VIDKAD----------NWETLPRDVAESSLEFVSL 591
Query: 513 VGIEDPVRPE 542
VGI DP R E
Sbjct: 592 VGIYDPPRTE 601
Score = 34.3 bits (75), Expect = 0.017
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 565 CQXAGITVPMVTGDNVNXARSIAMKCGILRP 657
C AGI V M+TGD+ A++IA + GI+ P
Sbjct: 609 CHRAGIRVHMLTGDHPETAKAIAREVGIIPP 639
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 46.0 bits (104), Expect = 5e-06
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Frame = +3
Query: 177 YTFNSVRKSMSTVIPHNGGYRLYTKGASEIVLKKCAFIYGHEGRLEKFTRDMQERL--VR 350
++F+S RK+ + + Y KG E VL++ + + G L++ DM +
Sbjct: 667 FSFSSDRKASGAIFEYKDKYYFVVKGMPERVLQQSTSVITN-GSLDE-VEDMHSHADYFK 724
Query: 351 QVIEPMACDGLRTISVAYRDF---VPGKADINQVHVDXEPHWDDEDXIVNNLTCLCVVGI 521
++I A LRT+ + YR F P N W+D ++T L GI
Sbjct: 725 EMITGYAKRSLRTLGLCYRVFDSWPPKDIPTNDEDSSNPLKWEDA---FTDMTFLGFFGI 781
Query: 522 EDPVRPEVPEA 554
DP+RP+VP A
Sbjct: 782 MDPIRPDVPLA 792
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +1
Query: 517 GSRTP*GPRFQRPXRKCQXAGITVPMVTGDNVNXARSIAMKCGI 648
G P P + CQ AG+TV MVTGDN+ A++IA +CGI
Sbjct: 780 GIMDPIRPDVPLAVKVCQGAGVTVRMVTGDNIVTAKAIASQCGI 823
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 33.5 bits (73), Expect = 0.029
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Frame = +3
Query: 183 FNSVRKSMSTVI--PHNGGYRLYTKGASEIVLKKCAFIYGHEGRLEKFTRDMQERLVRQV 356
F+S RK MS ++ P N Y L KGA I+ + RLE + + +
Sbjct: 741 FSSARKRMSVIVKGPDNR-YVLICKGADSIIFE----------RLEPNEQVELRKTTSEH 789
Query: 357 IEPMACDGLRTISVAYRDFVPG-------KADINQVHVDXEPHWDDE--DXIVNNLTCLC 509
+ A +GLRT+ +A R+ K DI ++ +E D I ++LT L
Sbjct: 790 LRIFALEGLRTLCIAKRELTEEEYYEWKEKYDIAASAIENREEQIEEVADLIESHLTLLG 849
Query: 510 VVGIEDPVRPEVPEA 554
IED ++ VP++
Sbjct: 850 GTAIEDRLQEGVPDS 864
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 183 FNSVRKSMSTVIP-HNGGYRLYTKGASEIVLKKCA 284
FNS RK MS V +G RLY KGA +++++ A
Sbjct: 654 FNSTRKRMSIVFRCPDGKIRLYVKGADTVIMERLA 688
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 568 QXAGITVPMVTGDNVNXARSIAMKCGIL 651
Q AGI + ++TGD A +I M C ++
Sbjct: 780 QTAGIKIWVLTGDRQETAINIGMSCKLI 807
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 154 PKSRSPGCTPSTRCGRACPPSY--RTTAATGSTLRELRRSCLKSAPSSTGTRAAWRSSRA 327
P+S + G P GR+ PP R+ +TG L S S P + RS+ A
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402
Query: 328 TCRSGSCARSSSP 366
G+ +R+S+P
Sbjct: 403 LPPLGNASRTSTP 415
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 574 AGITVPMVTGDNVNXARSIAMKCGILRP 657
AGI + ++TGD V A +I C +L P
Sbjct: 894 AGIKLWVLTGDKVETAINIGYSCNLLDP 921
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 417 PGKADINQVHVDXEPHWDDEDXIVNNLTCLCVVG 518
P K I + + + D + + N+TCLCVVG
Sbjct: 854 PSKLVILETGMVKASYQMDRESLSENITCLCVVG 887
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 74 GNKTECALLGFVLALGQSYEAVSRKSSRRVVHQGV 178
G KT A+ GFV + G+S + ++R +++ + +GV
Sbjct: 48 GEKTTYAISGFVRSKGESDDCINRLTTQDGLLEGV 82
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 559 RKCQXAGITVPMVTGDNVNXARSIAMKCGILRPTD 663
R+ A I M TGDNV + + +CG+L P D
Sbjct: 863 RELNDARIRTVMCTGDNVLTSICVGKRCGML-PED 896
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 TAATGSTLRE--LRRSCLKSAPSSTGTRAAWRSSRATCRSGSCARSSSPWPATGCGPSPW 399
++++ STL L S + S SS+ + ++ SS ++ + S + SSS ++ S
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 400 PTGTS 414
PT TS
Sbjct: 283 PTSTS 287
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +1
Query: 94 PSRIRPGSRAELRSRQ*KVIPKSRSPGCTPSTRCGRACPPSYRTTAATGSTLRELRRSCL 273
PS S + S ++P S S + S+ + P +T ++ S+ + +
Sbjct: 130 PSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSV 189
Query: 274 KSAPSSTGTRAAWRSSRATCRSGSCARSSSPWPAT 378
S SST + AA S+ ++ S S SSS P++
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 331 CRSGSCARSSSPWPATGCGPS 393
C+SGS +S SPW G S
Sbjct: 26 CKSGSSVKSGSPWSIKNDGKS 46
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 574 AGITVPMVTGDNVNXARSIAM 636
AGI V M+TGD V AR IA+
Sbjct: 654 AGIHVWMLTGDKVETARCIAI 674
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 271 LKSAPSSTGTRAAWRSSRATCRSGSCARSSSPWPAT-GCGPSPWPTGTS 414
L S +S+ T ++ SS ++ RSGS + SSS +T G S T TS
Sbjct: 519 LSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTS 567
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 245 VEPVAAVVRYDGGHALPHRVEGVHPGER 162
++PV +V+ + GHA+ +E HP +
Sbjct: 49 LDPVGSVLLTNDGHAILREIEVAHPAAK 76
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 215 DGGHALPHRVEGVHPG 168
D GH+ PH VHPG
Sbjct: 141 DSGHSTPHSKGDVHPG 156
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 574 AGITVPMVTGDNVNXARSIAMKCGILR 654
AGI M+TGD A +I CG+++
Sbjct: 1094 AGIKFWMLTGDKKETAINIGHSCGVIK 1120
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 330 MQERLVRQVIEPMACDGLRTISVAYRDFVPGKADINQVH 446
++E L+ ++ +RT+ VAY DF ++ QVH
Sbjct: 104 VKEPLINKLRTSRIASKIRTVQVAYLDFTSLESRYFQVH 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,934
Number of Sequences: 5004
Number of extensions: 46200
Number of successful extensions: 182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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