Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1728
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    29   3.3  
12_02_1060 - 25752181-25754229                                         29   4.3  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   9.9  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    28   9.9  
01_01_0870 - 6789903-6792251                                           28   9.9  

>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 406  ESVSLWFSSSV*YSHAASLVPFAANMKQFKLQQNTKQNLYDKT 534
            ES  L+F S++ Y H AS +    ++  FK Q +  QNLY  T
Sbjct: 1310 ESTRLYFESALKYLHVASTLEPPPSIDGFK-QCDAAQNLYSDT 1351


>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 505 FVVI*TVSYWLRMERARQHANIT 437
           FVV+  VS WL + R R+HA +T
Sbjct: 292 FVVVLGVSIWLLLHRRRKHAGLT 314


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 329 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVC 198
           G V  AG D A   LLGG + A+  + + GP  R ++ + L+ C
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMR-IFRSDLRWC 319


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 191 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 21
           D N L D+ +  +LSNG    AH  I  VR   +   A S  S     +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -1

Query: 329 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVCLYDINSLLDVLVYRIL 150
           G + G+    AV +L G     +  +T +  VG   +T  +++  + +N    +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 149 SNGSVQVAH 123
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,224
Number of Sequences: 37544
Number of extensions: 369741
Number of successful extensions: 1045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)