Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1728
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    73   4e-15
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 72.5 bits (170), Expect = 4e-15
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
 Frame = +3

Query: 6   KXNHCMIITFSVFLLIIFVAELAVGIAGYM--KHTDLEDSVMRNLNASITQYPVDKNVQK 179
           + +HCM ITF+ FLL I + ++AV +  ++  K+ D   ++          Y ++   + 
Sbjct: 75  RESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKD 134

Query: 180 TIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTK 359
            ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T + +N ++ GC+  
Sbjct: 135 FIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISNSYTNGCVEA 185

Query: 360 LVVHMKDXXXXXXXXXXXXXXXXXXXXXFACCLARSIRS 476
           L   +K                       A CLA SI++
Sbjct: 186 LKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKN 224


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 244 SAQSAGLFIPQHCKSVCMISIVFWT 170
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 443 YHTEELNQSDTDSNAGEHHTNVLHVNNQF 357
           +H++ L+ SD D +  EH   +L + + F
Sbjct: 496 FHSQVLSMSDYDISNIEHEALLLVITSTF 524


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 420 KRYRLQRRRAPYQCPSCEQ 364
           + YR      PYQC  C +
Sbjct: 109 RHYRTHTGEKPYQCEYCSK 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 299  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 201
            A+ID L  A R        GP GR+V +A L V
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 299  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 201
            A+ID L  A R        GP GR+V +A L V
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,366
Number of Sequences: 438
Number of extensions: 4183
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)