Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1724
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 101 2e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 101 2e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 97 6e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.011
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 30 0.99
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 4.0
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 4.0
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 27 5.3
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 5.3
06_03_0630 + 22926652-22928133 27 9.2
03_06_0201 + 32318928-32319202,32319302-32319482,32319915-323199... 27 9.2
02_05_0550 + 29904733-29905596 27 9.2
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 101 bits (243), Expect = 2e-22
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +3
Query: 66 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 233
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 234 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 410
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 411 KLGEYXITCG 440
+LG+Y + G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 101 bits (243), Expect = 2e-22
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +3
Query: 66 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 233
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 234 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 410
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 411 KLGEYXITCG 440
+LG+Y + G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 97.1 bits (231), Expect = 6e-21
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +3
Query: 66 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 233
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 234 TSGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 410
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 411 KLGEYXITCG 440
+LG+Y I G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.011
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 159 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 251
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 29.9 bits (64), Expect = 0.99
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2
Query: 224 ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 391
+ A W + + ++ +W R Y P W+ GRRA D S+ T PT
Sbjct: 14 LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73
Query: 392 GRICRGEVRRIXNYLWLL 445
GR+ E +I ++++LL
Sbjct: 74 GRVSGKE--QIKHFVYLL 89
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 244 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 119
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 236 EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 346
E RRD + +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
>05_01_0269 +
2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 310 SFARMIWSVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEIS 173
+F +I+ P + R+ ++ P LV S S S+P TIF+ S I+
Sbjct: 251 AFEGLIFGCPHLSICRIQPVMMP-LVQSCSLSQPPTIFSCLSLSIT 295
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 285 CH*GRCTACPLSSRR 241
CH G+C CPL RR
Sbjct: 324 CHAGKCGGCPLQGRR 338
>06_03_0630 + 22926652-22928133
Length = 493
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIA 257
RCV A G DG V A++E + E + + VA + N SG VT A
Sbjct: 438 RCVELAMAGGGDGGVRARAERWRERAAEAVAAGGSSERNLRAFASGAVTQA 488
>03_06_0201 +
32318928-32319202,32319302-32319482,32319915-32319987,
32320083-32320262,32320908-32321005,32321433-32321530,
32321615-32321657,32322131-32322189,32322238-32322331
Length = 366
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 171 FEISKDEVAKIVAGFENESLL 233
F +S DEVA++V+G+E L+
Sbjct: 110 FTVSNDEVARVVSGWEARGLV 130
>02_05_0550 + 29904733-29905596
Length = 287
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 257 GHAVHLPQWHRPYHPREAWQGRRALHEDTASCGHFSL*RTHPTSAGRICRGEVRR 421
G +HLP W R + + W A +E A+ RT P+ + C E+ R
Sbjct: 219 GAGMHLPPWRRARYVQAKWS---APYERVAAAAPPEGARTAPSGGRKRCGMEIGR 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,890,380
Number of Sequences: 37544
Number of extensions: 268082
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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