Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1723
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    31   0.14 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   3.1  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   7.2  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 165 VQELHRXGHEISVFSITHXDDPQYWTSGSYDD 260
           V++LH  GHE SV+S+    D +Y  SGS D+
Sbjct: 451 VEQLH--GHEESVYSVAFSPDGKYLVSGSLDN 480


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +1

Query: 475  PHKCNGXAHXCP---SRSHPVWEMVMNELDR 558
            P KC      C    S  HPV EM+ NELDR
Sbjct: 1159 PVKCVIDGDLCEMYYSLPHPVQEMIANELDR 1189


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 IHHCSSWTRSDMALHI 460
           +HHC  +T +D+ +HI
Sbjct: 274 LHHCLQYTNTDLEMHI 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,504
Number of Sequences: 5004
Number of extensions: 40805
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)