Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1723
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens ...    31   6.4  

>AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45009 fis, clone BRAWH3012779. ).
          Length = 179

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +1

Query: 268 LXWPEXVLSLNVTQISL--TLX*LXFGRLTYVXAETNXSK*WVINTSYMMHPSLLLLDAF 441
           L WP  + ++  T + L   L    + +LT   +    +   + ++S++MH     L   
Sbjct: 99  LGWPSCLCAVAATALILLEALKITNYAQLTLYSSHNFQN---LFSSSHLMHILSAALHYL 155

Query: 442 RYGLTHCIXRMPHKCNG 492
               THC+   PH C G
Sbjct: 156 SASQTHCLNSSPHPCKG 172


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,326,552
Number of Sequences: 237096
Number of extensions: 1513839
Number of successful extensions: 1811
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)