Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1723
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    96   2e-20
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    96   2e-20
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    96   2e-20
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    87   2e-17

>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 54/151 (35%), Positives = 77/151 (50%)
 Frame = +3

Query: 9   VPXMGTITXNGAVNVDNIDLYEQIFNGXRXNPNGCXIKGTFFGSHKYTNYAAVQELHRXG 188
           VP M  ++ +  +    I+  + +F+G   NPNGC IKGTFF SH++ NY     LH   
Sbjct: 54  VPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTN 113

Query: 189 HEISVFSITHXDDPQYWTSGSYDDWLAXMAGXXXIIERYANITDSXIIXVRAPYLRVGGN 368
           HEI V SIT  D     +  + + W     G    +  ++ I  S II  RAP L++GG+
Sbjct: 114 HEIGVNSITRED----LSGRTQERWYKEQKGMRETLAEFSFIDRSHIIGTRAPELKIGGD 169

Query: 369 KXFEMMGDQYFVYDASITAPLGRVPIWPYTL 461
             + MM +  F +D S+   L   P WP TL
Sbjct: 170 AQYRMMSENNFTFDNSM---LVSSPYWPQTL 197


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 54/151 (35%), Positives = 77/151 (50%)
 Frame = +3

Query: 9    VPXMGTITXNGAVNVDNIDLYEQIFNGXRXNPNGCXIKGTFFGSHKYTNYAAVQELHRXG 188
            VP M  ++ +  +    I+  + +F+G   NPNGC IKGTFF SH++ NY     LH   
Sbjct: 2123 VPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTN 2182

Query: 189  HEISVFSITHXDDPQYWTSGSYDDWLAXMAGXXXIIERYANITDSXIIXVRAPYLRVGGN 368
            HEI V SIT  D     +  + + W     G    +  ++ I  S II  RAP L++GG+
Sbjct: 2183 HEIGVNSITRED----LSGRTQERWYKEQKGMRETLAEFSFIDRSHIIGTRAPELKIGGD 2238

Query: 369  KXFEMMGDQYFVYDASITAPLGRVPIWPYTL 461
              + MM +  F +D S+   L   P WP TL
Sbjct: 2239 AQYRMMSENNFTFDNSM---LVSSPYWPQTL 2266


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 54/151 (35%), Positives = 77/151 (50%)
 Frame = +3

Query: 9    VPXMGTITXNGAVNVDNIDLYEQIFNGXRXNPNGCXIKGTFFGSHKYTNYAAVQELHRXG 188
            VP M  ++ +  +    I+  + +F+G   NPNGC IKGTFF SH++ NY     LH   
Sbjct: 995  VPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTN 1054

Query: 189  HEISVFSITHXDDPQYWTSGSYDDWLAXMAGXXXIIERYANITDSXIIXVRAPYLRVGGN 368
            HEI V SIT  D     +  + + W     G    +  ++ I  S II  RAP L++GG+
Sbjct: 1055 HEIGVNSITRED----LSGRTQERWYKEQKGMRETLAEFSFIDRSHIIGTRAPELKIGGD 1110

Query: 369  KXFEMMGDQYFVYDASITAPLGRVPIWPYTL 461
              + MM +  F +D S+   L   P WP TL
Sbjct: 1111 AQYRMMSENNFTFDNSM---LVSSPYWPQTL 1138


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = +3

Query: 99   NPNGCXIKGTFFGSHKYTNYAAVQELHRXGHEISVFSITHXDDPQYWTSGSYDDWLAXMA 278
            NPNGC +K TFF SH++TNY AV  L +   EI+  SI+H    +   + + + WL  M 
Sbjct: 1557 NPNGCDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISH----ESLENANTNRWLNEMD 1612

Query: 279  GXXXIIERYANITDSXIIXVRAPYLRVGGNKXFEMMGDQYFVYDASITAPLG--RVPIWP 452
            G   I+ ++    +  I+ +R+P L +GG+  FEMM    F++D S++A  G    P WP
Sbjct: 1613 GQRRILAKFGGAPEEEIVGIRSPQLALGGDNQFEMMIGAEFLWDNSMSANPGIHGEPFWP 1672

Query: 453  YTL 461
             T+
Sbjct: 1673 QTM 1675


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,335
Number of Sequences: 27780
Number of extensions: 233922
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)