Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1722
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.4  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.2  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 309 KKTMHDSSSLVMT-IYKIVTFKNIIF*RANFVSIVMRETLRCVVYLAPLSTF*LEKILWF 485
           + T  D + L  T ++ +V    ++  RAN +  V++ +L   +Y+ P ++    +IL  
Sbjct: 533 ESTSEDFNFLYATKLWGMVRNDTVLINRANLMLAVLKNSLNTYIYMTPTTSVQPSQILGN 592

Query: 486 RVTHMRKSSVPVAIQATYCSSLALC 560
            VT +  + +     ATY S+   C
Sbjct: 593 YVTGI--TFMNKVDYATYFSAEEYC 615


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 767 AXEHHS*TVLWLFIIPLLFNYGLYKIXKSIQFCYYINT 654
           A EH+     W+FII +L+ Y LY +   + +CY + +
Sbjct: 62  ALEHYEVPYKWIFIIEMLY-YELY-LTLYVCWCYKLRS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,423
Number of Sequences: 5004
Number of extensions: 64843
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)