Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1722
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   4.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   4.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 408 VMRETLRCVVYLAPLSTF*LEKILWFRVTHMRK 506
           ++RE L+ +  L  L+T   EK+L F++T  ++
Sbjct: 384 ILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQ 416


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIE 110


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIE 110


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIE 110


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIE 110


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINHIE 110


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 713 FNYGLYKIXKSIQFCYYINTIE 648
           +NY  Y      Q CY IN IE
Sbjct: 89  YNYSNYNNNNYKQLCYNINYIE 110


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 210 LLNVYTRNNGGFLTLYHKVYKKI 142
           L N Y  NN  +  LY   YKK+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 210 LLNVYTRNNGGFLTLYHKVYKKI 142
           L N Y  NN  +  LY   YKK+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 754 ILKQFYGYLLFHCY 713
           +LK+  GY LFH Y
Sbjct: 239 VLKRRLGYYLFHTY 252


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 239 CFIVNLMLYSYLMYIHVIMVAF 174
           C IV + L S +MYI  I++ +
Sbjct: 403 CLIVVIALVSIIMYIAFIILQY 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,425
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)