Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1721
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158     30   1.6  
05_01_0231 - 1730428-1730817                                           29   3.7  

>01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158
          Length = 272

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 575 PALKKGQESPLQYYLPPPAWCRKTVTEVTAKMQCELSXSKDW 700
           PAL+ G   P ++ L PP W +  V  + +   C+   ++ W
Sbjct: 106 PALRAGNVQPYEFIL-PPTWKQTRVANILSGNYCQPKCAEPW 146


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 353 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 496
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,682,258
Number of Sequences: 37544
Number of extensions: 406954
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)