Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1721
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 304 VIKHHHRT*SRESILLSPWAVCINRSFVCPS-LLIHAYIFGLLFASVSIL-DMMHRLTLN 131
           +IKH H T  R   LL    V I  SF   S LLI  ++  +L A+  ++   ++ L + 
Sbjct: 64  IIKHIHSTVVRTYFLLFGCFVIIIISFALSSMLLILVFLIAILSAAYLVMVSKVNHLLMG 123

Query: 130 IFAI 119
           I AI
Sbjct: 124 ILAI 127


>Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical
           protein ZK678.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 302 YQTPSSHIIS*VHFTIAVGRVYKS----ILCLSFVTNTCLYL 189
           Y  PS  ++    F IA G+VYKS    ++     TN C+YL
Sbjct: 28  YGIPSFFMMIFTLFLIAFGKVYKSSFYTLVIFDLSTNICVYL 69


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 548 AVRQYYAAFPALKKGQESPLQYYLPPPAWCRKTVTEVTAKMQCELSXSKD 697
           AV+ Y +A    +K  +S LQ+YL    +    + E    ++C +    D
Sbjct: 731 AVQMYSSAMKKFRKENDSTLQHYLAKAYYRANMLNEAKEALECAMLDQLD 780


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,118,591
Number of Sequences: 27780
Number of extensions: 366678
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)