Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1719
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.4  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   5.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   7.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   7.2  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 217 VNISDEDCCKEWGCVPNGEAPPSPPGV*TSKP 312
           VN SD     +W C   G   P PP V  S P
Sbjct: 27  VNESDPKAKPQWECPVRGLTIPPPPSVDHSAP 58


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 211 APVNISDEDCCKEWGCV 261
           A +N  D DC   WGCV
Sbjct: 169 ALLNAQDRDCISGWGCV 185


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 442 DXPITFIHSLE*TMDERR*DEHTFCIEQRNNI 537
           D P  F+  +E    ERR + HT C+ + +N+
Sbjct: 508 DCPKEFVWGVEKVFQERRLNIHTTCLYRDSNL 539


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 191 VHLCTGRHPSIYLTRIVVRNGDVYP 265
           + LC GR P +YL +  VRN    P
Sbjct: 334 ISLCYGRPPGLYLKQTDVRNTTQLP 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,452
Number of Sequences: 5004
Number of extensions: 71597
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)