Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1715
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...   139   3e-34
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    27   2.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   6.0  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    25   7.9  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   7.9  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.9  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score =  139 bits (337), Expect = 3e-34
 Identities = 86/253 (33%), Positives = 124/253 (49%), Gaps = 21/253 (8%)
 Frame = +2

Query: 5   WYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIF 184
           WY ++   L++QL  ++       G  R +I+PH              +Q+    ++R+F
Sbjct: 14  WYLDDTELLTKQLKSFIKNPTPETGK-RFVISPHAGYMYSGKVASQGFQQLDFSKIQRVF 72

Query: 185 ILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEAT-RQFDRMDEQTDENEHSIE 361
           + GPSHH+    C +S      TPL DL +D+ +  +L A+   FD M    DE+EHS+E
Sbjct: 73  VFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDVDESEHSLE 132

Query: 362 MHLPYIA--KVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCH 535
           M  P +A   + +       I+PI++G+LT          L+ Y+ D  N  VISSDFCH
Sbjct: 133 MQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCH 192

Query: 536 WGSRFRYT-------------WKDSSRG-----HIYQSIEWLDKLGMDLIEKMDPKAFTD 661
           WG RF YT              K   RG      IY+SI  LD +GM +IE      F++
Sbjct: 193 WGRRFGYTLYLNDTNQLEDAVLKYKRRGGPTSPKIYESISNLDHIGMKIIETKSSDDFSE 252

Query: 662 YLNKYXNTICGRH 700
           YL    NTICGR+
Sbjct: 253 YLKTTQNTICGRY 265


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +2

Query: 485 YLADPQNLLVISSDFCHWGSRFRYTWKDSSRGHIYQSIEW---LDKLGMDLIEKM--DPK 649
           Y+  P+    I  D C  G  +   +K SS+ H Y   E+    DK    LI ++  DP 
Sbjct: 74  YIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPV 133

Query: 650 AFTDYLNKYXNT 685
             T  +N + N+
Sbjct: 134 NTTRTINSHNNS 145


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 227 LSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENE 349
           L  LD +  P  D+ +  QI ++   T   D MD+QTD +E
Sbjct: 639 LKPLD-FVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDVDE 678


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 222 ALFRPSTSTRLPSTISPSINKYTRSWRPHVSSIEWT-SRPMKMS 350
           ++F+ S S +L +T+S +   Y R  +P+   + WT S PM +S
Sbjct: 622 SMFKSSLS-QLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVLS 664


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 443 TPEKEAKYGAILAPYLADPQN 505
           TP KE   G I  P LADP +
Sbjct: 86  TPRKEGGLGGINIPLLADPSH 106


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 561 GRIAPGATFTRASSGWTNWEWI 626
           G IA G T    SSG  NW W+
Sbjct: 185 GLIATGLTKIPKSSGLPNWGWL 206


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 296 LEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEE 397
           L AT  +D  DE+ D+   S+E HL    K   E
Sbjct: 76  LFATAPYDHEDEEADKIYQSVEEHLSKRRKSQRE 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,745
Number of Sequences: 5004
Number of extensions: 69739
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)